############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data AffiXcan ### ############################################################################## ############################################################################## * checking for file ‘AffiXcan/DESCRIPTION’ ... OK * preparing ‘AffiXcan’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘AffiXcan.Rmd’ using rmarkdown Quitting from AffiXcan.Rmd:256-277 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `reducer$value.cache[[as.character(idx)]] <- values`: ! wrong args for environment subassignment --- Backtrace: ▆ 1. └─AffiXcan::affiXcanTrain(...) 2. └─AffiXcan::affiXcanPca(...) 3. ├─BiocParallel::bplapply(...) 4. └─BiocParallel::bplapply(...) 5. └─BiocParallel:::.bpinit(...) 6. ├─BiocParallel::bploop(...) 7. └─BiocParallel:::bploop.lapply(...) 8. └─BiocParallel:::.bploop_impl(...) 9. └─BiocParallel:::.collect_result(manager, reducer, progress, BPPARAM) 10. ├─BiocParallel:::.reducer_add(reducer, njob, value) 11. └─BiocParallel:::.reducer_add(reducer, njob, value) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'AffiXcan.Rmd' failed with diagnostics: wrong args for environment subassignment --- failed re-building ‘AffiXcan.Rmd’ SUMMARY: processing the following file failed: ‘AffiXcan.Rmd’ Error: Vignette re-building failed. Execution halted