############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data fluentGenomics ### ############################################################################## ############################################################################## * checking for file ‘fluentGenomics/DESCRIPTION’ ... OK * preparing ‘fluentGenomics’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘fluentGenomics.Rmd’ using rmarkdown 2025-11-25 13:13:49.791 R[91774:52051201] XType: com.apple.fonts is not accessible. 2025-11-25 13:13:49.856 R[91774:52051201] XType: XTFontStaticRegistry is enabled. Quitting from fluentGenomics.Rmd:365-369 [de-genes] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! unable to find an inherited method for function 'select' for signature 'x = "GRanges"' --- Backtrace: ▆ 1. ├─de_genes %>% filter(padj < 0.01) %>% ... 2. └─AnnotationDbi::select(...) 3. └─methods (local) ``(``, ``, ``) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'fluentGenomics.Rmd' failed with diagnostics: unable to find an inherited method for function 'select' for signature 'x = "GRanges"' --- failed re-building ‘fluentGenomics.Rmd’ SUMMARY: processing the following file failed: ‘fluentGenomics.Rmd’ Error: Vignette re-building failed. Execution halted