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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data tidytof
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* checking for file ‘tidytof/DESCRIPTION’ ... OK
* preparing ‘tidytof’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘quality-control.Rmd’ using rmarkdown

Quitting from quality-control.Rmd:61-76 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `value[[3L]]()`:
! failed to connect
  reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! SSL connect error [bioconductor.org]:
TLS connect error: error:00000000:lib(0):func(0):reason(0)
  Consider rerunning with 'localHub=TRUE'
---
Backtrace:
     ▆
  1. ├─tidytof::tof_preprocess(...)
  2. │ └─dplyr::mutate(...)
  3. ├─dplyr::mutate(...)
  4. ├─dplyr::rename_with(...)
  5. ├─dplyr::mutate(...)
  6. ├─tidytof::as_tof_tbl(HDCytoData::Levine_32dim_flowSet())
  7. └─HDCytoData::Levine_32dim_flowSet()
  8.   └─ExperimentHub:::.get_ExperimentHub()
  9.     └─ExperimentHub::ExperimentHub()
 10.       └─AnnotationHub::.Hub(...)
 11.         └─base::tryCatch(...)
 12.           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 13.             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 14.               └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'quality-control.Rmd' failed with diagnostics:
failed to connect
  reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! SSL connect error [bioconductor.org]:
TLS connect error: error:00000000:lib(0):func(0):reason(0)
  Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘quality-control.Rmd’

--- re-building ‘clustering.Rmd’ using knitr
--- finished re-building ‘clustering.Rmd’

--- re-building ‘contributing-to-tidytof.Rmd’ using knitr
--- finished re-building ‘contributing-to-tidytof.Rmd’

--- re-building ‘differential-discovery-analysis.Rmd’ using knitr
2025-10-26 18:14:19.818 R[74847:551427956] XType: Using static font registry.
--- finished re-building ‘differential-discovery-analysis.Rmd’

--- re-building ‘dimensionality-reduction.Rmd’ using knitr
--- finished re-building ‘dimensionality-reduction.Rmd’

--- re-building ‘downsampling.Rmd’ using knitr
--- finished re-building ‘downsampling.Rmd’

--- re-building ‘feature-extraction.Rmd’ using knitr
--- finished re-building ‘feature-extraction.Rmd’

--- re-building ‘modeling.Rmd’ using knitr
--- finished re-building ‘modeling.Rmd’

--- re-building ‘preprocessing.Rmd’ using knitr
--- finished re-building ‘preprocessing.Rmd’

--- re-building ‘reading-and-writing-data.Rmd’ using knitr
--- finished re-building ‘reading-and-writing-data.Rmd’

--- re-building ‘tidytof.Rmd’ using knitr
--- finished re-building ‘tidytof.Rmd’

SUMMARY: processing the following file failed:
  ‘quality-control.Rmd’

Error: Vignette re-building failed.
Execution halted