############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data sketchR ### ############################################################################## ############################################################################## * checking for file ‘sketchR/DESCRIPTION’ ... OK * preparing ‘sketchR’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘sketchR.Rmd’ using rmarkdown 2025-12-19 09:38:18.036 R[21620:325787406] XType: Using static font registry. --- finished re-building ‘sketchR.Rmd’ --- re-building ‘sketching_workflows.Rmd’ using rmarkdown python-build: use openssl@3 from homebrew python-build: use readline from homebrew Downloading Python-3.12.10.tar.xz... -> https://www.python.org/ftp/python/3.12.10/Python-3.12.10.tar.xz Installing Python-3.12.10... python-build: use tcl-tk from homebrew python-build: use readline from homebrew python-build: use zlib from xcode sdk BUILD FAILED (OS X 13.7.8 using python-build 2.6.17) Inspect or clean up the working tree at /tmp/python-build.20251219093918.36308 Results logged to /tmp/python-build.20251219093918.36308.log Last 10 log lines: /usr/bin/install -c -m 755 Modules/select.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/select.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/_socket.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/_socket.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/syslog.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/syslog.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/termios.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/termios.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/_posixshmem.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/_posixshmem.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/_multiprocessing.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/_multiprocessing.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/_ctypes.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/_ctypes.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/_curses.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/_curses.cpython-312-darwin.so install: Modules/_curses.cpython-312-darwin.so: No such file or directory make: *** [sharedinstall] Error 71 Quitting from sketching_workflows.Rmd:60-97 [process-data] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! installation of Python 3.12.10 failed --- Backtrace: ▆ 1. └─snifter::fitsne(...) 2. └─snifter:::.create_tsne(...) 3. └─basilisk::basiliskStart(python_env) 4. └─basilisk::obtainEnvironmentPath(env) 5. └─basilisk::setupBasiliskEnv(...) 6. ├─base::suppressMessages(install_python(version)) 7. │ └─base::withCallingHandlers(...) 8. └─reticulate::install_python(version) 9. └─reticulate:::stopf("installation of Python %s failed", version) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'sketching_workflows.Rmd' failed with diagnostics: installation of Python 3.12.10 failed --- failed re-building ‘sketching_workflows.Rmd’ SUMMARY: processing the following file failed: ‘sketching_workflows.Rmd’ Error: Vignette re-building failed. Execution halted