############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data schex ### ############################################################################## ############################################################################## * checking for file ‘schex/DESCRIPTION’ ... OK * preparing ‘schex’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Seurat_to_SCE.Rmd’ using rmarkdown 2025-10-26 17:52:45.404 R[73550:551201414] XType: Using static font registry. --- finished re-building ‘Seurat_to_SCE.Rmd’ --- re-building ‘using_schex.Rmd’ using rmarkdown Quitting from using_schex.Rmd:58-65 [load] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `value[[3L]]()`: ! failed to connect reason: Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Timeout was reached [bioconductor.org]: Connection timed out after 10003 milliseconds Consider rerunning with 'localHub=TRUE' --- Backtrace: ▆ 1. └─TENxPBMCData::TENxPBMCData(dataset = "pbmc3k") 2. └─ExperimentHub::ExperimentHub() 3. └─AnnotationHub::.Hub(...) 4. └─base::tryCatch(...) 5. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'using_schex.Rmd' failed with diagnostics: failed to connect reason: Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Timeout was reached [bioconductor.org]: Connection timed out after 10003 milliseconds Consider rerunning with 'localHub=TRUE' --- failed re-building ‘using_schex.Rmd’ SUMMARY: processing the following file failed: ‘using_schex.Rmd’ Error: Vignette re-building failed. Execution halted