############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data pipeFrame ### ############################################################################## ############################################################################## * checking for file ‘pipeFrame/DESCRIPTION’ ... OK * preparing ‘pipeFrame’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘pipeFrame.Rmd’ using rmarkdown Quitting from pipeFrame.Rmd:762-765 [unnamed-chunk-31] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Bioconductor version cannot be validated; no internet connection? See #troubleshooting section in vignette --- Backtrace: ▆ 1. └─global examplePipe(...) 2. └─pipeFrame::setGenome(genome = genome) 3. └─base::lapply(checkAndInstall, function(cai) cai()) 4. └─pipeFrame (local) FUN(X[[i]], ...) 5. └─global cai() 6. └─pipeFrame::runWithFinishCheck(...) 7. └─global func(NULL) 8. └─BSgenome::available.genomes() 9. └─BSgenome:::get_data_annotation_contrib_url(type) 10. ├─utils::contrib.url(BiocManager::repositories()["BioCann"], type = type) 11. └─BiocManager::repositories() 12. └─BiocManager:::.version_validate(version) 13. ├─base::ifelse(.is_CRAN_check(), .message(txt), .stop(txt)) 14. └─BiocManager:::.stop(txt) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'pipeFrame.Rmd' failed with diagnostics: Bioconductor version cannot be validated; no internet connection? See #troubleshooting section in vignette --- failed re-building ‘pipeFrame.Rmd’ SUMMARY: processing the following file failed: ‘pipeFrame.Rmd’ Error: Vignette re-building failed. Execution halted