############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ndexr ### ############################################################################## ############################################################################## * checking for file ‘ndexr/DESCRIPTION’ ... OK * preparing ‘ndexr’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ndexr-vignette.Rmd’ using rmarkdown Quitting from ndexr-vignette.Rmd:99-105 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `curl::curl_fetch_memory()`: ! Timeout was reached [www.ndexbio.org]: Resolving timed out after 10002 milliseconds --- Backtrace: ▆ 1. ├─ndexr::ndex_connect() 2. │ ├─ndexr:::ndex_helper_httpResponseHandler(...) 3. │ └─httr::GET(url = url, config = auth_param) 4. │ └─httr:::request_perform(req, hu$handle$handle) 5. │ ├─httr:::request_fetch(req$output, req$url, handle) 6. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle) 7. │ └─curl::curl_fetch_memory(url, handle = handle) 8. └─curl:::raise_libcurl_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ndexr-vignette.Rmd' failed with diagnostics: Timeout was reached [www.ndexbio.org]: Resolving timed out after 10002 milliseconds --- failed re-building ‘ndexr-vignette.Rmd’ SUMMARY: processing the following file failed: ‘ndexr-vignette.Rmd’ Error: Vignette re-building failed. Execution halted