############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ncRNAtools ### ############################################################################## ############################################################################## * checking for file ‘ncRNAtools/DESCRIPTION’ ... OK * preparing ‘ncRNAtools’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ncRNAtools.Rmd’ using rmarkdown Quitting from ncRNAtools.Rmd:163-178 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `FUN()`: ! object of type 'externalptr' is not subsettable --- Backtrace: ▆ 1. └─ncRNAtools::rnaCentralGenomicCoordinatesSearch(...) 2. ├─base::grepl("^URS", unlist(lapply(parsedResult, `[`, "external_name"))) 3. │ └─base::is.factor(x) 4. ├─base::unlist(lapply(parsedResult, `[`, "external_name")) 5. └─base::lapply(parsedResult, `[`, "external_name") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ncRNAtools.Rmd' failed with diagnostics: object of type 'externalptr' is not subsettable --- failed re-building ‘ncRNAtools.Rmd’ SUMMARY: processing the following file failed: ‘ncRNAtools.Rmd’ Error: Vignette re-building failed. Execution halted