############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data basilisk ### ############################################################################## ############################################################################## * checking for file ‘basilisk/DESCRIPTION’ ... OK * preparing ‘basilisk’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘motivation.Rmd’ using rmarkdown python-build: use openssl@3 from homebrew python-build: use readline from homebrew Downloading Python-3.12.10.tar.xz... -> https://www.python.org/ftp/python/3.12.10/Python-3.12.10.tar.xz Installing Python-3.12.10... python-build: use tcl-tk from homebrew python-build: use readline from homebrew python-build: use zlib from xcode sdk BUILD FAILED (OS X 13.7.8 using python-build 2.6.16-3-g3b25462) Inspect or clean up the working tree at /tmp/python-build.20251211194037.9715 Results logged to /tmp/python-build.20251211194037.9715.log Last 10 log lines: /usr/bin/install -c -m 755 Modules/select.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/select.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/_socket.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/_socket.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/syslog.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/syslog.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/termios.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/termios.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/_posixshmem.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/_posixshmem.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/_multiprocessing.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/_multiprocessing.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/_ctypes.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/_ctypes.cpython-312-darwin.so /usr/bin/install -c -m 755 Modules/_curses.cpython-312-darwin.so /Users/biocbuild/.pyenv/versions/3.12.10/lib/python3.12/lib-dynload/_curses.cpython-312-darwin.so install: Modules/_curses.cpython-312-darwin.so: No such file or directory make: *** [sharedinstall] Error 71 Quitting from motivation.Rmd:251-256 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! installation of Python 3.12.10 failed --- Backtrace: ▆ 1. └─basilisk::createLocalBasiliskEnv(...) 2. └─basilisk::setupBasiliskEnv(envpath, ...) 3. ├─base::suppressMessages(install_python(version)) 4. │ └─base::withCallingHandlers(...) 5. └─reticulate::install_python(version) 6. └─reticulate:::stopf("installation of Python %s failed", version) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'motivation.Rmd' failed with diagnostics: installation of Python 3.12.10 failed --- failed re-building ‘motivation.Rmd’ SUMMARY: processing the following file failed: ‘motivation.Rmd’ Error: Vignette re-building failed. Execution halted