############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAmodR.AlkAnilineSeq ### ############################################################################## ############################################################################## * checking for file ‘RNAmodR.AlkAnilineSeq/DESCRIPTION’ ... OK * preparing ‘RNAmodR.AlkAnilineSeq’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘RNAmodR.AlkAnilineSeq.Rmd’ using rmarkdown Quitting from RNAmodR.AlkAnilineSeq.Rmd:67-77 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `value[[3L]]()`: ! failed to connect reason: Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! SSL connect error [bioconductor.org]: TLS connect error: error:00000000:lib(0):func(0):reason(0) Consider rerunning with 'localHub=TRUE' --- Backtrace: ▆ 1. ├─rtracklayer::GFF3File(RNAmodR.Data.example.AAS.gff3()) 2. │ └─rtracklayer::GFFFile(resource, "3") 3. │ └─methods::new(gffFileClass(version), resource = resource) 4. │ ├─methods::initialize(value, ...) 5. │ └─methods::initialize(value, ...) 6. └─ExperimentHub (local) RNAmodR.Data.example.AAS.gff3() 7. └─ExperimentHub:::.get_ExperimentHub() 8. └─ExperimentHub::ExperimentHub() 9. └─AnnotationHub::.Hub(...) 10. └─base::tryCatch(...) 11. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 12. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 13. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'RNAmodR.AlkAnilineSeq.Rmd' failed with diagnostics: failed to connect reason: Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! SSL connect error [bioconductor.org]: TLS connect error: error:00000000:lib(0):func(0):reason(0) Consider rerunning with 'localHub=TRUE' --- failed re-building ‘RNAmodR.AlkAnilineSeq.Rmd’ SUMMARY: processing the following file failed: ‘RNAmodR.AlkAnilineSeq.Rmd’ Error: Vignette re-building failed. Execution halted