############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 Pirat ### ############################################################################## ############################################################################## * checking for file ‘Pirat/DESCRIPTION’ ... OK * preparing ‘Pirat’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Pirat.Rmd’ using rmarkdown Requirement already satisfied: pip in /var/cache/basilisk/1.22.0/Pirat/1.4.0/envPirat/lib/python3.12/site-packages (25.0.1) Collecting pip Using cached pip-25.3-py3-none-any.whl.metadata (4.7 kB) Collecting wheel Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) Collecting setuptools Using cached setuptools-80.9.0-py3-none-any.whl.metadata (6.6 kB) Using cached pip-25.3-py3-none-any.whl (1.8 MB) Using cached wheel-0.45.1-py3-none-any.whl (72 kB) Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB) Installing collected packages: wheel, setuptools, pip Attempting uninstall: pip Found existing installation: pip 25.0.1 Uninstalling pip-25.0.1: Successfully uninstalled pip-25.0.1 Successfully installed pip-25.3 setuptools-80.9.0 wheel-0.45.1 ERROR: Could not find a version that satisfies the requirement pytorch==2.5.1 (from versions: 0.1.2, 1.0.2) ERROR: No matching distribution found for pytorch==2.5.1 Quitting from Pirat.Rmd:90-92 [impute] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Error installing package(s): "'pytorch==2.5.1'" --- Backtrace: ▆ 1. └─Pirat::my_pipeline_llkimpute(subbouyssie) 2. └─basilisk::basiliskStart(envPirat) 3. └─basilisk::obtainEnvironmentPath(env) 4. └─basilisk::setupBasiliskEnv(...) 5. └─reticulate::virtualenv_create(...) 6. └─reticulate:::pip_install(python, packages) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Pirat.Rmd' failed with diagnostics: Error installing package(s): "'pytorch==2.5.1'" --- failed re-building ‘Pirat.Rmd’ SUMMARY: processing the following file failed: ‘Pirat.Rmd’ Error: Vignette re-building failed. Execution halted