############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MutationalPatterns ### ############################################################################## ############################################################################## * checking for file ‘MutationalPatterns/DESCRIPTION’ ... OK * preparing ‘MutationalPatterns’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Introduction_to_MutationalPatterns.Rmd’ using rmarkdown Quitting from Introduction_to_MutationalPatterns.Rmd:112-115 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `h()`: ! error in evaluating the argument 'x' in selecting a method for function 'head': Bioconductor version cannot be validated; no internet connection? See #troubleshooting section in vignette --- Backtrace: ▆ 1. ├─utils::head(available.genomes()) 2. ├─BSgenome::available.genomes() 3. │ └─BSgenome:::get_data_annotation_contrib_url(type) 4. │ ├─utils::contrib.url(BiocManager::repositories()["BioCann"], type = type) 5. │ └─BiocManager::repositories() 6. │ └─BiocManager:::.version_validate(version) 7. │ ├─base::ifelse(.is_CRAN_check(), .message(txt), .stop(txt)) 8. │ └─BiocManager:::.stop(txt) 9. │ └─base::stop(.msg(...), call. = call.) 10. └─base::.handleSimpleError(...) 11. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Introduction_to_MutationalPatterns.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'head': Bioconductor version cannot be validated; no internet connection? See #troubleshooting section in vignette --- failed re-building ‘Introduction_to_MutationalPatterns.Rmd’ SUMMARY: processing the following file failed: ‘Introduction_to_MutationalPatterns.Rmd’ Error: Vignette re-building failed. Execution halted