############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MsBackendMetaboLights ### ############################################################################## ############################################################################## * checking for file ‘MsBackendMetaboLights/DESCRIPTION’ ... OK * preparing ‘MsBackendMetaboLights’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MsBackendMetaboLights.Rmd’ using rmarkdown Quitting from MsBackendMetaboLights.Rmd:78-83 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: ! Failed to connect to MetaboLights. No internet connection? Does the data set "MTBLS39" exist? - cannot open the connection --- Backtrace: ▆ 1. └─MsBackendMetaboLights::mtbls_list_files("MTBLS39") 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MsBackendMetaboLights.Rmd' failed with diagnostics: Failed to connect to MetaboLights. No internet connection? Does the data set "MTBLS39" exist? - cannot open the connection --- failed re-building ‘MsBackendMetaboLights.Rmd’ SUMMARY: processing the following file failed: ‘MsBackendMetaboLights.Rmd’ Error: Vignette re-building failed. Execution halted