############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 HiCool ### ############################################################################## ############################################################################## * checking for file ‘HiCool/DESCRIPTION’ ... OK * preparing ‘HiCool’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘HiCool.Rmd’ using rmarkdown Quitting from HiCool.Rmd:70-80 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `py_get_attr()`: ! AttributeError: module 'hicstuff' has no attribute 'pipeline' Run `reticulate::py_last_error()` for details. --- Backtrace: ▆ 1. └─HiCool::HiCool(...) 2. └─HiCool:::.processFastq(...) 3. ├─base::write(...) 4. │ └─base::cat(...) 5. ├─reticulate::py_capture_output(...) 6. │ ├─base::tryCatch(...) 7. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers) 8. │ └─base::force(expr) 9. ├─hs$pipeline 10. └─reticulate:::`$.python.builtin.module`(hs, "pipeline") 11. └─reticulate::py_get_attr(x, name, FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'HiCool.Rmd' failed with diagnostics: AttributeError: module 'hicstuff' has no attribute 'pipeline' Run `reticulate::py_last_error()` for details. --- failed re-building ‘HiCool.Rmd’ SUMMARY: processing the following file failed: ‘HiCool.Rmd’ Error: Vignette re-building failed. Execution halted