############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 GBScleanR ### ############################################################################## ############################################################################## * checking for file ‘GBScleanR/DESCRIPTION’ ... OK * preparing ‘GBScleanR’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BasicUsageOfGBScleanR.rmd’ using rmarkdown Quitting from BasicUsageOfGBScleanR.rmd:107-109 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `seqOptimize()`: ! unused argument (gdsfn = gds$filename) --- Backtrace: ▆ 1. └─GBScleanR::loadGDS(gds_fn, verbose = FALSE) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'BasicUsageOfGBScleanR.rmd' failed with diagnostics: unused argument (gdsfn = gds$filename) --- failed re-building ‘BasicUsageOfGBScleanR.rmd’ SUMMARY: processing the following file failed: ‘BasicUsageOfGBScleanR.rmd’ Error: Vignette re-building failed. Execution halted