############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data EnrichmentBrowser ### ############################################################################## ############################################################################## * checking for file ‘EnrichmentBrowser/DESCRIPTION’ ... OK * preparing ‘EnrichmentBrowser’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘EnrichmentBrowser.Rmd’ using rmarkdown 2025-10-26 16:22:40.135 R[71840:549964136] XType: Using static font registry. Quitting from EnrichmentBrowser.Rmd:758-762 [ggea-graph] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `curl::curl_fetch_memory()`: ! SSL connect error [rest.kegg.jp]: TLS connect error: error:00000000:lib(0):func(0):reason(0) --- Backtrace: ▆ 1. ├─EnrichmentBrowser::ggeaGraph(...) 2. │ └─EnrichmentBrowser:::.constructGGEAGraph(...) 3. │ └─EnrichmentBrowser:::.getKEGGDisplayName(nodes, org = org) 4. │ └─KEGGREST::keggList(paste(org, gene.id, sep = ":")) 5. │ └─KEGGREST:::.getUrl(url, .listParser, nameColumn = 1, valueColumn = 2) 6. │ └─httr::GET(url) 7. │ └─httr:::request_perform(req, hu$handle$handle) 8. │ ├─httr:::request_fetch(req$output, req$url, handle) 9. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle) 10. │ └─curl::curl_fetch_memory(url, handle = handle) 11. └─curl:::raise_libcurl_error(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'EnrichmentBrowser.Rmd' failed with diagnostics: SSL connect error [rest.kegg.jp]: TLS connect error: error:00000000:lib(0):func(0):reason(0) --- failed re-building ‘EnrichmentBrowser.Rmd’ SUMMARY: processing the following file failed: ‘EnrichmentBrowser.Rmd’ Error: Vignette re-building failed. Execution halted