############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data CBN2Path ### ############################################################################## ############################################################################## * checking for file ‘CBN2Path/DESCRIPTION’ ... OK * preparing ‘CBN2Path’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘CBN2Path.Rmd’ using rmarkdown Quitting from CBN2Path.Rmd:54-64 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `value[[3L]]()`: ! GDC server down, try to use this package later --- Backtrace: ▆ 1. └─CBN2Path::getRawTCGAData("TCGA-BLCA") 2. └─TCGAbiolinks::GDCquery(...) 3. └─TCGAbiolinks::isServeOK() 4. └─base::tryCatch(...) 5. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'CBN2Path.Rmd' failed with diagnostics: GDC server down, try to use this package later --- failed re-building ‘CBN2Path.Rmd’ SUMMARY: processing the following file failed: ‘CBN2Path.Rmd’ Error: Vignette re-building failed. Execution halted