############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data octad ### ############################################################################## ############################################################################## * checking for file ‘octad/DESCRIPTION’ ... OK * preparing ‘octad’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘octad.Rmd’ using rmarkdown Quitting from octad.Rmd:99-103 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `pm[[2]]`: ! subscript out of bounds --- Backtrace: ▆ 1. ├─octad::topLineEval(topline = "HEPG2", mysRGES = sRGES_example) 2. │ ├─plotly::ggplotly(p, tooltip = c("text", "label")) %>% ... 3. │ ├─plotly::ggplotly(p, tooltip = c("text", "label")) 4. │ └─plotly:::ggplotly.ggplot(p, tooltip = c("text", "label")) 5. │ └─plotly::gg2list(...) 6. └─plotly::layout(., margin = list(l = 15)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'octad.Rmd' failed with diagnostics: subscript out of bounds --- failed re-building ‘octad.Rmd’ SUMMARY: processing the following file failed: ‘octad.Rmd’ Error: Vignette re-building failed. Execution halted