############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data MicrobiotaProcess ### ############################################################################## ############################################################################## * checking for file ‘MicrobiotaProcess/DESCRIPTION’ ... OK * preparing ‘MicrobiotaProcess’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MicrobiotaProcess.Rmd’ using rmarkdown Quitting from MicrobiotaProcess.Rmd:243-274 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error in `modifyList()`: ! is.list(x) is not TRUE --- Backtrace: ▆ 1. └─aplot::plot_list(gglist = list(h1, h2), tag_levels = "A") 2. └─aplot::as.patchwork(res) 3. ├─base::do.call(plot_list2, y) 4. └─aplot (local) ``(...) 5. └─utils::modifyList(pt, list(size = tag_size)) 6. └─base::stopifnot(is.list(x), is.list(val)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'MicrobiotaProcess.Rmd' failed with diagnostics: is.list(x) is not TRUE --- failed re-building ‘MicrobiotaProcess.Rmd’ SUMMARY: processing the following file failed: ‘MicrobiotaProcess.Rmd’ Error: Vignette re-building failed. Execution halted