############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/R/R-4.3.1/bin/R CMD build --keep-empty-dirs --no-resave-data rGREAT ### ############################################################################## ############################################################################## * checking for file ‘rGREAT/DESCRIPTION’ ... OK * preparing ‘rGREAT’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘local-GREAT.Rmd’ using rmarkdown --- finished re-building ‘local-GREAT.Rmd’ --- re-building ‘online-GREAT.Rmd’ using rmarkdown --- finished re-building ‘online-GREAT.Rmd’ --- re-building ‘other-docs.Rmd’ using rmarkdown --- finished re-building ‘other-docs.Rmd’ --- re-building ‘other-geneset-databases.Rmd’ using rmarkdown --- finished re-building ‘other-geneset-databases.Rmd’ --- re-building ‘other-organisms.Rmd’ using rmarkdown trying URL 'https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCF_011762595.1/download?include_annotation_type=GENOME_GFF,SEQUENCE_REPORT&filename=GCF_011762595.1.zip' downloaded 16.3 MB Quitting from lines 118-120 [unnamed-chunk-10] (other-organisms.Rmd) Error: processing vignette 'other-organisms.Rmd' failed with diagnostics: download from 'https://api.ncbi.nlm.nih.gov/datasets/v2alpha/genome/accession/GCF_011762595.1/download?include_annotation_type=GENOME_GFF,SEQUENCE_REPORT&filename=GCF_011762595.1.zip' failed --- failed re-building ‘other-organisms.Rmd’ SUMMARY: processing the following file failed: ‘other-organisms.Rmd’ Error: Vignette re-building failed. Execution halted