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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/strandCheckR_1.10.0.tar.gz && rm -rf strandCheckR.buildbin-libdir && mkdir strandCheckR.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=strandCheckR.buildbin-libdir strandCheckR_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL strandCheckR_1.10.0.zip && rm strandCheckR_1.10.0.tar.gz strandCheckR_1.10.0.zip
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 20  487k   20  100k    0     0   524k      0 --:--:-- --:--:-- --:--:--  524k
100  487k  100  487k    0     0  1602k      0 --:--:-- --:--:-- --:--:-- 1602k

install for i386

* installing *source* package 'strandCheckR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'strandCheckR'
    finding HTML links ... done
    calculateStrandCoverage                 html  
    calculateStrandNbReads                  html  
    checkPairedEnd                          html  
    concatenateAlignments                   html  
    filterDNA                               html  
    getWinFromBamFile                       html  
    getWinFromGranges                       html  
    getWinFromIRanges                       html  
    finding level-2 HTML links ... done

    getWinFromReadInfo                      html  
    getWinOfAlignments                      html  
    intersectWithFeature                    html  
    keptProbaWin                            html  
    keptReadFragment                        html  
    plotHist                                html  
    plotWin                                 html  
    strandCheckR-package                    html  
    summarizeHist                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'strandCheckR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'strandCheckR' as strandCheckR_1.10.0.zip
* DONE (strandCheckR)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'strandCheckR' successfully unpacked and MD5 sums checked