############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf VariantExperiment.buildbin-libdir && mkdir VariantExperiment.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VariantExperiment.buildbin-libdir VariantExperiment_1.6.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'VariantExperiment' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Creating a new generic function for 'seqAlleleFreq' in package 'VariantExperiment' Creating a new generic function for 'seqAlleleCount' in package 'VariantExperiment' Creating a new generic function for 'seqMissing' in package 'VariantExperiment' ** help *** installing help indices converting help for package 'VariantExperiment' finding HTML links ... done VariantExperiment-class html VariantExperiment-methods html REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/meat/VariantExperiment.buildbin-libdir/00LOCK-VariantExperiment/00new/VariantExperiment/help/titv+2CvariantExperiment-method.html VariantExperiment-package html loadVariantExperiment html makeVariantExperimentFromGDS html makeVariantExperimentFromVCF html saveVariantExperiment html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'VariantExperiment' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'VariantExperiment' as VariantExperiment_1.6.0.zip * DONE (VariantExperiment)