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Command output

* checking for working latex ... OK
* using log directory '/loc/biocbuild/1.8d/madman/Rpacks/gff3Plotter.Rcheck'
* using Version 2.3.0 (2006-04-24)
* checking for file 'gff3Plotter/DESCRIPTION' ... OK
* this is package 'gff3Plotter' version '1.6.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gff3Plotter' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for library.dynam ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking Rd files ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating gff3Plotter-Ex.R ... OK
* checking examples ... ERROR
Running examples in gff3Plotter-Ex.R failed.
The error most likely occurred in:

> ### * plot.gff.toFile
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: plot.gff.toFile
> ### Title: Plots Formatted Tiling Array Data to a PNG or JPG File
> ### Aliases: plot.gff.toFile
> ### Keywords: hplot file
> 
> ### ** Examples
> 
>    # getting data file name
>    dataDir = system.file("extData", package = "gff3Plotter")
>    gff3File = paste(dataDir, "test.gff3", sep = "/")
> 
>    # reading the input data file
>    data = read.gff(gff3File)
gffLoad# LOADING < /loc/biocbuild/1.8d/madman/Rpacks/gff3Plotter.Rcheck/gff3Plotter/extData/test.gff3 >
gffLoad# Removing Extra Data
gffLoad# Splitting Types
done
gffLoad# Splitting  Attributes: Name-done; ID-done
gffLoad# Removing ATTRIBUTES Field From : done
gffLoad# Splitting  Attributes: expNames-done; scoreType-done; coeff-done; coeffType-done; sticky-done
gffLoad# Removing ATTRIBUTES Field From : done
gffLoad# Splitting  Attributes: expNames-done; scoreType-done; coeff-done; coeffType-done
gffLoad# Removing ATTRIBUTES Field From : done
gffLoad# Splitting  Attributes: anatomy-done; devStage-done
gffLoad# Removing ATTRIBUTES Field From : done
gffLoad# Removing ATTRIBUTES Field From Other Types: exon-done; complete
gffLoad# Sorting START of genomic_DNA:  complete
gffLoad# Removing  Records matching no Genes - done
gffLoad# Updating  START,END,STRAND Fields from  - done
gffLoad# Splitting  by  - done
gffLoad# Removing  Records matching no Genes - done
gffLoad# Updating  START,END,STRAND Fields from  - done
gffLoad# Splitting  by  - done
gffLoad# LOAD COMPLETE
>    xrange = c(50000, 200000)
>    coco.tresholds = 0.4
>    names(coco.tresholds) = "Twist"
>    expro.tresholds = c(0.2, 0.5, 0.1)
>    names(expro.tresholds) = c("expDmf2", "expLmd", "expTwist")
>    stages = c("stage13", "stage14", "stage15", "stage16")
>    anatomy = "muscle"
>    #plot.gff(data, xrange, coco.tresholds, expro.tresholds, stages, anatomy)
>    plot.gff.toFile(data, "test.jpg", xrange = xrange, coco.tresholds = coco.tresholds, expro.tresholds = expro.tresholds, par.devstage = stages, par.anatomy = anatomy)
Warning: unable to open connection to X11 display ''
Error in X11(paste("jpeg::", quality, ":", filename, sep = ""), width,  : 
	unable to start device JPEG
Execution halted