Package: BiocBookDemo
Version: 1.10.0
Depends: R (>= 4.3)
Suggests: BiocManager, BiocVersion, BiocStyle, glue, sessioninfo, knitr
License: MIT + file LICENSE
MD5sum: e4dccb0d73c1f2016a8042ed1a0dba0a
NeedsCompilation: no

Package: csawBook
Version: 1.20.0
Depends: BiocFileCache, ChIPpeakAnno, chipseqDBData, csaw, edgeR, Gviz,
        org.Mm.eg.db, rebook, rmarkdown, Rsamtools, rtracklayer,
        TxDb.Mmusculus.UCSC.mm10.knownGene
License: GPL-3
MD5sum: cff3e1849ff3dfdba1dd6538a7c8b1c0
NeedsCompilation: no

Package: OHCA
Version: 1.8.0
Depends: R (>= 4.4),
Imports: HiCExperiment, HiCool, HiContacts, HiContactsData, DNAZooData,
        fourDNData, plyinteractions, GenomicInteractions, terra, Rfast,
        WGCNA, diffHic, strawr, multiHiCcompare, TopDom, GOTHiC,
        BSgenome.Hsapiens.UCSC.hg38, ggbio, cowplot, patchwork, fs,
        knitr, BiocStyle, sessioninfo
License: MIT + file LICENSE
MD5sum: aff61c9ef38b94c7ded443871b5945f6
NeedsCompilation: no

Package: OMA
Version: 1.0.0
Depends: R (>= 4.6.0)
Suggests: ape, BiocBook, BiocManager, BiocStyle, bluster,
        ComplexHeatmap, curatedMetagenomicData, dendextend, dplyr, DT,
        factoextra, ggdag, ggExtra, ggplot2, ggpubr, ggtree, glue, gt,
        knitr, maaslin3, mediation, mia, miaTime, miaViz,
        microbiomeDataSets, mikropml, MOFA2, NbClust, NMF, patchwork,
        philr, phyloseq, qgraph, rebook, scales, scater, scuttle,
        sechm, sessioninfo, shadowtext, stats,
        tidySingleCellExperiment, tidyverse, vegan
License: CC BY 4.0
MD5sum: 16e3fa8929b702a8155e8d8f0a80e24d
NeedsCompilation: no

Package: OSCA
Version: 1.22.0
Depends: BiocStyle, knitr, rebook, rmarkdown
Suggests: OSCA.intro, OSCA.basic, OSCA.advanced, OSCA.workflows,
        OSCA.multisample
License: CC BY 4.0
MD5sum: 8395f439cac3b696db6d0f9a7aa1b08c
NeedsCompilation: no

Package: OSCA.basic
Version: 1.20.0
Depends: AnnotationHub, apcluster, AUCell, BiocFileCache, BiocSingular,
        bluster, celldex, cluster, dendextend, dynamicTreeCut, GO.db,
        gridExtra, GSEABase, igraph, limma, mbkmeans, org.Mm.eg.db,
        pheatmap, rebook, rmarkdown, RMTstat, robustbase, Rtsne,
        scater, scran, scrapper, scRNAseq, scuttle, SingleR, statmod,
        viridis
Imports: OSCA.workflows
Suggests: rmarkdown, knitr, OSCA.advanced
License: CC BY 4.0
MD5sum: 8759719f0e25767de794a7a56cb8bbf2
NeedsCompilation: no

Package: OSCA.intro
Version: 1.20.0
Depends: batchelor, BiocFileCache, BiocManager, bluster,
        DropletTestFiles, DropletUtils, gridExtra, knitr,
        LoomExperiment, R.utils, readxl, rebook, rmarkdown,
        rtracklayer, scater, scran, scRNAseq, scuttle,
        SingleCellExperiment, uwot, zellkonverter
Suggests: BiocManager, rmarkdown, knitr
License: CC BY 4.0
MD5sum: 957751a3e5ba6535e6f6d41a735e4529
NeedsCompilation: no

Package: OSCA.multisample
Version: 1.20.0
Depends: batchelor, BiocSingular, bluster, DropletUtils, edgeR,
        gridExtra, igraph, MouseGastrulationData, pheatmap, rebook,
        rmarkdown, Rtsne, scater, scran, scuttle, SingleR,
        TENxPBMCData, TSCAN, uwot, viridis
Imports: OSCA.workflows
Suggests: OSCA.basic, rmarkdown, knitr
MD5sum: 3da3d5c4d620ab3d6e41aa4e934dc75e
NeedsCompilation: no

Package: OSCA.workflows
Version: 1.20.0
Depends: AnnotationHub, batchelor, BiocFileCache, BiocNeighbors,
        BiocParallel, BiocSingular, bluster, celldex, cluster,
        DropletTestFiles, DropletUtils, dynamicTreeCut, edgeR,
        EnsDb.Hsapiens.v86, gridExtra, HCAData, igraph, limma,
        org.Hs.eg.db, org.Mm.eg.db, pheatmap, rebook, rmarkdown,
        scater, scPCA, scran, scRNAseq, scuttle, SingleR, viridis
Suggests: BiocManager, rmarkdown, knitr
License: CC BY 4.0
MD5sum: fe5bba03fe9721dcfe836b4812e43869
NeedsCompilation: no

Package: OSTA
Version: 1.2.0
Depends: R (>= 4.5)
Imports: anndataR, AUCell, Banksy, basilisk, BayesSpace, BiocFileCache,
        BiocParallel, CARDspa, DESpace, doMC, dplyr, DropletUtils,
        EBImage, ExperimentHub, GenomeInfoDb, ggfortify, ggplot2,
        ggrepel, ggspavis, harmony, hoodscanR, igraph, imcdatasets,
        imcRtools, jsonlite, lme4, lmerTest, msigdbr, muSpaData, nnSVG,
        openxlsx, osfr, OSTA.data, pals, patchwork, pheatmap, RANN,
        RColorBrewer, reticulate, rtracklayer, scales, scater, scider,
        scran, scuttle, scRNAseq, sf, SFEData, SingleR, sosta,
        SpaceTrooper, spacexr, SpatialExperiment, SpatialExperimentIO,
        spatialFDA, SpatialFeatureExperiment, spatialLIBD, spatstat,
        spdep, spicyR, SpotSweeper, STexampleData, tidyr, VisiumIO,
        Voyager, zoo
Suggests: BiocManager, BiocPkgTools, BiocStyle, BiocVersion, CCPlotR,
        downlit, glue, knitr, markdown, quarto, scrapper, sessioninfo,
        Statial, xml2
License: CC BY 4.0
MD5sum: 89ceba272612bd2568b182050118bc5f
NeedsCompilation: no

Package: scrapbook
Version: 1.0.0
Depends: AnnotationHub, BiocStyle, bluster, cluster, DropletTestFiles,
        DropletUtils, dynamicTreeCut, edgeR, ggplot2, gridExtra,
        msigdbr, pheatmap, scater, scrapper, scRNAseq, TENxPBMCData
Suggests: rmarkdown, bookdown, knitr
License: MIT + file LICENSE
MD5sum: eed037c9fd6a81aa41909c88d3d3e2dd
NeedsCompilation: no

Package: SingleRBook
Version: 1.22.0
Depends: AnnotationHub, BiocNeighbors, BiocParallel, BiocStyle,
        bluster, celldex, gridExtra, igraph, knitr, ontoProc, pheatmap,
        rebook, rmarkdown, scater, scran, scrapper, scRNAseq, scuttle,
        SingleR, TENxPBMCData, viridis
MD5sum: b59dba8a5315f7cf7821d48af6360e2d
NeedsCompilation: no