# Generated by roxygen2: do not edit by hand

S3method("[",owlents)
S3method(labels,owlents)
S3method(plot,owlents)
S3method(print,owlents)
export(CLfeats)
export(ancestors)
export(ancestors_names)
export(available_ontos)
export(bind_formal_tags)
export(bioregistry_ols_resources)
export(browse_ontos)
export(cellTypeToGO)
export(cellTypeToGenes)
export(children_TAG)
export(children_names)
export(cleanCLOnames)
export(common_classes)
export(connect_classes)
export(ctmarks)
export(cyclicSigset)
export(demoApp)
export(dropStop)
export(fastGrep)
export(findCommonAncestors)
export(formalize)
export(getCellosaurusOnto)
export(getChebiLite)
export(getChebiOnto)
export(getDiseaseOnto)
export(getGeneOnto)
export(getHCAOnto)
export(getLeavesFromTerm)
export(getMondoOnto)
export(getOncotreeOnto)
export(getOnto)
export(getPATOnto)
export(getPROnto)
export(getSIOOnto)
export(getUBERON_NE)
export(get_ordo_owl_path)
export(graph2paths)
export(improveNodes)
export(jowl2classgraph)
export(jowl2classgraph_nio)
export(label_TAG)
export(ldfToTerms)
export(liberalMap)
export(makeSelectInput)
export(make_graphNEL_from_ontology_plot)
export(map2prose)
export(mapOneNaive)
export(nomenCheckup)
export(ontoDiff)
export(onto_plot2)
export(onto_roots)
export(owl2cache)
export(parents)
export(plot.owlents)
export(quickOnto)
export(recognizedPredicates)
export(search_labels)
export(secLevGen)
export(selectFromMap)
export(setup_entities)
export(setup_entities2)
export(seur3kTab)
export(siblings_TAG)
export(subclasses)
export(subset_descendants)
export(sym2CellOnto)
export(valid_ontonames)
exportClasses(TermSet)
exportMethods(c)
exportMethods(show)
import("shiny", except=c("dataTableOutput", "renderDataTable"))
import(Rgraphviz)
import(ellmer)
import(graph)
import(ontologyIndex)
importClassesFrom(S4Vectors,DataFrame)
importFrom(AnnotationHub,AnnotationHub)
importFrom(Biobase,selectSome)
importFrom(DT,dataTableOutput)
importFrom(DT,renderDataTable)
importFrom(RBGL,sp.between)
importFrom(S4Vectors,DataFrame)
importFrom(S4Vectors,List)
importFrom(S4Vectors,mcols)
importFrom(SummarizedExperiment,"colData<-")
importFrom(SummarizedExperiment,colData)
importFrom(dplyr,filter)
importFrom(dplyr,left_join)
importFrom(dplyr,select)
importFrom(dplyr,transmute)
importFrom(graph,addEdge)
importFrom(graph,adj)
importFrom(graph,nodes)
importFrom(grid,gpar)
importFrom(grid,grid.text)
importFrom(httr,HEAD)
importFrom(httr,status_code)
importFrom(igraph,subcomponent)
importFrom(jsonlite,fromJSON)
importFrom(magrittr,"%>%")
importFrom(methods,as)
importFrom(methods,new)
importFrom(methods,show)
importFrom(ontologyIndex,get_descendants)
importFrom(ontologyPlot,onto_plot)
importFrom(reticulate,import)
importFrom(reticulate,iterate)
importFrom(stats,na.omit)
importFrom(utils,adist)
importFrom(utils,data)
importFrom(utils,read.delim)
