Package: netSmooth
Type: Package
Title: Network smoothing for scRNAseq
Version: 1.31.0
Authors@R: c(person("Jonathan", "Ronen", role = c("aut", "cre"),
                     email = "yablee@gmail.com"),
              person("Altuna", "Akalin", role = c("aut")))
Description: netSmooth is an R package for network smoothing of single
        cell RNA sequencing data. Using bio networks such as
        protein-protein interactions as priors for gene co-expression,
        netsmooth improves cell type identification from noisy, sparse
        scRNAseq data.
biocViews: Network, GraphAndNetwork, SingleCell, RNASeq,
        GeneExpression, Sequencing, Transcriptomics, Normalization,
        Preprocessing, Clustering, DimensionReduction
URL: https://github.com/BIMSBbioinfo/netSmooth
BugReports: https://github.com/BIMSBbioinfo/netSmooth/issues
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.5), scater (>= 1.15.11), clusterExperiment (>= 2.1.6)
Imports: entropy, SummarizedExperiment, SingleCellExperiment, Matrix,
        cluster, data.table, stats, methods, DelayedArray, HDF5Array
        (>= 1.15.13)
Suggests: knitr, testthat, Rtsne, biomaRt, igraph, STRINGdb, NMI,
        pheatmap, ggplot2, BiocStyle, rmarkdown, BiocParallel, uwot
VignetteBuilder: knitr
RoxygenNote: 7.0.2
Config/pak/sysreqs: libcairo2-dev libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libgmp3-dev libharfbuzz-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libwebp-dev libxml2-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:45:19 UTC
RemoteUrl: https://github.com/bioc/netSmooth
RemoteRef: HEAD
RemoteSha: 33fddd7b0e2b1a709ae1b19036b8e142b49d14de
NeedsCompilation: no
Packaged: 2026-03-10 09:13:52 UTC; root
Author: Jonathan Ronen [aut, cre],
  Altuna Akalin [aut]
Maintainer: Jonathan Ronen <yablee@gmail.com>
Built: R 4.6.0; ; 2026-03-10 09:17:30 UTC; windows
