Package: SpatialOmicsOverlay
Title: Spatial Overlay for Omic Data from Nanostring GeoMx Data
Description: Tools for NanoString Technologies GeoMx Technology.
        Package to easily graph on top of an OME-TIFF image. Plotting
        annotations can range from tissue segment to gene expression.
Version: 1.11.0
Encoding: UTF-8
Authors@R: c(person("Maddy", "Griswold", email = "mgriswold@nanostring.com", role = c("cre","aut")),
             person("Megan", "Vandenberg", email = "mvandenberg@nanostring.com", role = c("ctb")),
             person("Stephanie", "Zimmerman", role = c("ctb")))
Depends: R (>= 4.1.0)
Imports: S4Vectors, Biobase, base64enc, EBImage, ggplot2, XML,
        scattermore, dplyr, pbapply, data.table, readxl, magick,
        grDevices, stringr, plotrix, GeomxTools, BiocFileCache, stats,
        utils, methods, ggtext, tools, RBioFormats
Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0), stringi,
        qpdf, pheatmap, viridis, cowplot, vdiffr, sf
License: MIT
Collate: addImage.R addPlottingFactor.R coordinateGeneration.R
        imageManipulation.R omeExtraction.R plottingBasics.R
        readSpatialOverlay.R removeSamples.R SpatialPosition-class.R
        SpatialOverlay-class.R utils.R xmlParsing.R
biocViews: GeneExpression, Transcription, CellBasedAssays, DataImport,
        Transcriptomics, Proteomics, ProprietaryPlatforms, RNASeq,
        Spatial, DataRepresentation, Visualization
VignetteEngine: knitr::rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.3.1
Config/testthat/edition: 3
Config/pak/sysreqs: libcairo2-dev cmake libfftw3-dev libfontconfig1-dev
        libfreetype6-dev make libmagick++-dev gsfonts default-jdk
        libicu-dev libjpeg-dev libpng-dev libtiff-dev libxml2-dev
        libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:22:27 UTC
RemoteUrl: https://github.com/bioc/SpatialOmicsOverlay
RemoteRef: HEAD
RemoteSha: 5b92d663668b43644ce9bb2fb38918042ed72cf8
NeedsCompilation: no
Packaged: 2026-02-21 09:12:29 UTC; root
Author: Maddy Griswold [cre, aut],
  Megan Vandenberg [ctb],
  Stephanie Zimmerman [ctb]
Maintainer: Maddy Griswold <mgriswold@nanostring.com>
Built: R 4.6.0; ; 2026-02-21 09:14:20 UTC; windows
