fd79a73a3aadfe65d4d77ba52b75cda4 *CITATION
1b915f3ff41f90ac57d0d26c6e2ce236 *DESCRIPTION
9e356c500adc31c63aa253d2628ce34c *INDEX
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
3ed8d96c60bec4f33af767788bf806be *Meta/Rd.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
b3dc57abcf0732dbb17fceafd4b93295 *Meta/hsearch.rds
47d4d700aee2582b6ef330557be0c830 *Meta/links.rds
490ab160e22961be076e2b4519b287ac *Meta/nsInfo.rds
01476378479817ea245871ffd8ac4847 *Meta/package.rds
c651ac305408b99df185c05a23607d4b *NAMESPACE
2372455ac42d8fde78ba9be6a79187d0 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/bambu
ead4700437ee6fda67dc14a5f24c79b8 *R/bambu.rdb
27f08a2a593ca3ec118e0e2419beeaa7 *R/bambu.rdx
1cb8d194bebe1afcd8d2262d66c2f701 *R/sysdata.rdb
c74e8609b6de25fa98cf3a9e3685a6cd *R/sysdata.rdx
fcf710d04c83b67c40a2945fe9ced8c4 *README.md
aa95917805efcfe9bc76e306208fec1a *extdata/Homo_sapiens.GRCh38.91.annotations-txdb_chr9_1_1000000.sqlite
123638b7a424504dabf19dade96a8868 *extdata/Homo_sapiens.GRCh38.91_chr9_1_1000000.gtf
378f0bb57e44dcf91cd44d879da21bd5 *extdata/Homo_sapiens.GRCh38.dna_sm.primary_assembly_chr9_1_1000000.fa
2653234c35fbb855d298bf75233e4962 *extdata/Homo_sapiens.GRCh38.dna_sm.primary_assembly_chr9_1_1000000.fa.fai
a9d06b3b5d44984714a8be7c5a2ba7c0 *extdata/SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.bam
d016a5e09abcc432c87abe2ffe502662 *extdata/SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.bam.bai
1e0b9d85e569271cd05ff2f37ba5c293 *extdata/SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000_readClassSe.rds
f63e9e0da4939329f1a49e9956885550 *extdata/annotateSpliceOverlapByDist_testQuery.rds
02a8ad14f3e6086aed9923bfb2fab191 *extdata/annotateSpliceOverlapByDist_testSubject.rds
13a80407a57f71343245bec367a73b39 *extdata/annotateSpliceOverlapsByDist_refoutput.rds
ee23de13c8071eb314df4ae49c43b818 *extdata/annotationGranges_txdb2Grch38_91_chr9_1_1000000.rds
bb13aaac275fde70e2f68238b41fc966 *extdata/annotationGranges_txdbGrch38_91_chr9_1_1000000.rds
b08742c210251be954952e2fce1990ca *extdata/defaultModels.rds
fd6041f096c58ab238bda428416f155c *extdata/distanceToAnnotations_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
916c6a26d96a75dee56694fb6b952a2c *extdata/extendedAnnotationGranges_txdbGrch38_91_chr9_1_1000000.rds
0b9b02972b5f1a1d5187e5b0f6209846 *extdata/model_spliceSitePredictionEnd.end.ubj
acfd6690e06d0a0dab9434de557dc3f4 *extdata/model_spliceSitePredictionEnd.start.ubj
afef2fda4b530cc29a25e7443f4e0fad *extdata/model_spliceSitePredictionStart.end.ubj
929e0ab7e045f85810c3e7283b8b6839 *extdata/model_spliceSitePredictionStart.start.ubj
adacbc5861eccdb7641d1a7a261907b0 *extdata/readClassesStranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
a8e0274d4c91d2528abee7fb94c85985 *extdata/readClassesUnstranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
c75abfae5702007c478e889e3a0c8a10 *extdata/readGrgList_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
afda5689dd142c74faa46249bb9dc35b *extdata/read_class_ME.ubj
8ccd34cc2ad29df58a24bd7019d7bbcd *extdata/read_class_SE.ubj
56474106510b07313158241d98e2951d *extdata/seIsoReCombined_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
823b71e2129fc75c36836839b70d6f3d *extdata/seIsoReRef_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
a3c920614df5529c3dcf73cf94671c07 *extdata/seOutputCombined2_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
25141f7792c42f39e321da406b1a331b *extdata/seOutputCombinedExtended_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
99fac3b4254cca1240270774506779e6 *extdata/seOutputCombined_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
f7ac17a361e703e91c89ec04f82a54bd *extdata/seOutputExtended_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
1e7eec2e6863902fe42c63d5c420b14f *extdata/seOutput_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
656d9870557e5857388c36b8d1dd96a1 *extdata/seOutput_denovo_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
1dd3536a540c8059b90eebf59eea7583 *extdata/seOutput_distTable_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
8810a4f1a5daa33819c43554450b0977 *extdata/seOutput_lowMemoryMode_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
fdbc1c7f9a788fd83fac7f097857e8c6 *extdata/seOutput_trackReads_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
3810f62ddeac4f4edd2fd2f0f5f1136f *extdata/seReadClassBS_Stranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
3c5b2d02ea85fddac083e20cf36a5e30 *extdata/seReadClassStranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
8ab4b5c2ee06c4696c6d872c4c182019 *extdata/seReadClassUnstranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
fb21a9fc769f40213b39d5c5c8fd2dbf *extdata/seReadClass_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
aad0f4043a95b6c32f54c17cf3204c24 *extdata/standardJunctionModels_temp.txt
879bd1273dc48194e190f09f599da5c7 *extdata/xgb_model_splice_junction_correction.txt
caec42d01fef2d44e67dca0db462d91a *extdata/xgb_predictions_splice_junction_correction.txt
82df353751fe0b2c61498e3cd2169493 *help/AnIndex
6d99d1a072838771baf59bc09bd5aa0a *help/aliases.rds
1aad47d292de0b97cc7f71863d71fdd7 *help/bambu.rdb
cd2aa387fbaccf9fc285cb902963f3b5 *help/bambu.rdx
9f9b4ff87a1f4d41e61bbae73ac89399 *help/paths.rds
5254f9fa19c66b2965902936517ee2f4 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
bbd0ba120f41ed88ef860540acedf875 *libs/x64/bambu.dll
470f6060e7efa9b2f9a155057687f2c4 *libs/x64/symbols.rds
