Package: iSEEpathways
Title: iSEE extension for panels related to pathway analysis
Version: 1.8.0
Date: 2024-10-01
Authors@R: 
    c(person("Kevin", "Rue-Albrecht", email = "kevinrue67@gmail.com",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0003-3899-3872")),
    person("Thomas", "Sandmann", email = "tomsing1@gmail.com",
             role = c("ctb"),
             comment = c(ORCID = "0000-0002-6601-8890")),
    person("Charlotte", "Soneson", role="aut", email="charlottesoneson@gmail.com",
             comment = c(ORCID = '0000-0003-3833-2169')),
    person("Federico", "Marini", role="ctb", email="marinif@uni-mainz.de",
             comment = c(ORCID = '0000-0003-3252-7758')),
    person("Denali Therapeutics", role = c("fnd")))
Description: This package contains diverse functionality to extend the
        usage of the iSEE package, including additional classes for the
        panels or modes facilitating the analysis of pathway analysis
        results. This package does not perform pathway analysis.
        Instead, it provides methods to embed precomputed pathway
        analysis results in a SummarizedExperiment object, in a manner
        that is compatible with interactive visualisation in iSEE
        applications.
License: Artistic-2.0
URL: https://github.com/iSEE/iSEEpathways
BugReports: https://support.bioconductor.org/t/iSEEpathways
biocViews: Software, Infrastructure, DifferentialExpression,
        GeneExpression, GUI, Visualization, Pathways,
        GeneSetEnrichment, GO, ShinyApps
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: iSEE
Imports: ggplot2, methods, S4Vectors, shiny, shinyWidgets, stats,
        SummarizedExperiment
Suggests: airway, BiocStyle, covr, edgeR, fgsea, GO.db, iSEEde, knitr,
        org.Hs.eg.db, RefManageR, rmarkdown, scater, scuttle,
        sessioninfo, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev make libpng-dev libxml2-dev perl
        zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:25:06 UTC
RemoteUrl: https://github.com/bioc/iSEEpathways
RemoteRef: RELEASE_3_22
RemoteSha: 8fca83ecf4f6be81a1a932471a8952512a996317
NeedsCompilation: no
Packaged: 2025-11-11 15:08:01 UTC; root
Author: Kevin Rue-Albrecht [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3899-3872>),
  Thomas Sandmann [ctb] (ORCID: <https://orcid.org/0000-0002-6601-8890>),
  Charlotte Soneson [aut] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>),
  Federico Marini [ctb] (ORCID: <https://orcid.org/0000-0003-3252-7758>),
  Denali Therapeutics [fnd]
Maintainer: Kevin Rue-Albrecht <kevinrue67@gmail.com>
Built: R 4.5.2; ; 2025-11-11 15:14:45 UTC; windows
