IsDate                  Check if input is in the appropriate date
                        format
ValidationDependencies
                        Validation Dependencies
addColumn_Server        Server logic of module for adding a column
addColumn_UI            UI elements of module for adding a column
addRowRc_Server         Server logic of Resource tab module for adding
                        a row
addRowRc_UI             UI elements of Resource tab module for adding a
                        row
addRow_Server           Server logic of module for adding a row
addRow_UI               UI elements of module for adding a row
cBioPortalToDataFrame   Convert the cBioPortal sample- and patient-data
                        file format into a data.frame
cbpManager              Launch cbpManager
cbpManager-pkg          cbpManager
check_input_dates       Check the input of dates
convertDataFrame        Convert the data.frame to the appropriate file
                        format for cBioPortal
create_name             Sanitize names
deleteColumn_Server     Server logic of module for deleting a column
deleteColumn_UI         UI elements of module for deleting a column
deleteRowRc_Server      Server logic of Resource tab module for
                        deleting a row
deleteRowRc_UI          UI elements of module for removing a row
deleteRow_Server        Server logic of module for removing a row
deleteRow_UI            UI elements of module for removing a row
editRowRc_Server        Server logic of Resource tab module for editing
                        a row
editRowRc_UI            UI elements of module for editing a row
editRow_Server          Server logic of module for editing a row
editRow_UI              UI elements of module for editing a row
fncols                  Add empty column to a data.frame, if column
                        does not exist in the data.frame
generateOncotreeUIwidgets
                        Create shiny UI-widget for specific columns of
                        oncotree entries
generateUIwidgets       Generate UI input widget
getSampleIDs            Get Sample IDs associated with Patient IDs from
                        the data_clinical_sample.txt file
importPatientData       Import patient data into current study
                        data.frames
saveResource_Server     Server logic of module for saving the resource
                        data
saveResource_UI         UI elements of module for saving the resource
                        data
saveTimeline_Server     Server logic of module for saving the source
                        data
saveTimeline_UI         UI elements of module for saving the data
setupConda_cbpManager   Install conda environment with basilisk before
                        launching the app
shinyAppServer          Shiny app server function
shinyAppUI              Shiny app server object create the shiny
                        application user interface
updateOncotreeUIwidgets
                        Updates UI-widgets for specific columns of
                        oncotree entries
validateResourceDefinition
                        Validate resource_definition input
validateResourcePatient
                        Validate resource_patient input
validateResourceSample
                        Validate resource_sample input
validateResourceStudy   Validate resource_study input
writeLogfile            Write a line to a logfile containing the date,
                        time, username (from Shinyproxy), and the name
                        of the modified file.
