Package: RAREsim
Version: 1.14.0
Date: 2020-08-01
Title: Simulation of Rare Variant Genetic Data
Description: Haplotype simulations of rare variant genetic data that
        emulates real data can be performed with RAREsim. RAREsim uses
        the expected number of variants in MAC bins - either as
        provided by default parameters or estimated from target data -
        and an abundance of rare variants as simulated HAPGEN2 to
        probabilistically prune variants. RAREsim produces haplotypes
        that emulate real sequencing data with respect to the total
        number of variants, allele frequency spectrum, haplotype
        structure, and variant annotation.
Authors@R: c(person(given = "Megan", family = "Null", role = "aut", email = "mnull@collegeofidaho.edu"),
             person(given = "Ryan", family = "Barnard", role = "cre", email = "rbarnard1107@gmail.com"))
URL: https://github.com/meganmichelle/RAREsim
BugReports: https://github.com/meganmichelle/RAREsim/issues
License: GPL-3
LazyData: FALSE
biocViews: Genetics, Software, VariantAnnotation, Sequencing
RoxygenNote: 7.1.2
Encoding: UTF-8
VignetteBuilder: knitr
Depends: R (>= 4.1.0)
Imports: nloptr
Suggests: markdown, ggplot2, BiocStyle, rmarkdown, knitr, testthat (>=
        3.0.0)
Config/testthat/edition: 3
Config/pak/sysreqs: cmake
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:16:51 UTC
RemoteUrl: https://github.com/bioc/RAREsim
RemoteRef: RELEASE_3_22
RemoteSha: 9740e847038916bdabc3c582267c97e3f3cad961
NeedsCompilation: no
Packaged: 2025-11-11 16:41:16 UTC; root
Author: Megan Null [aut],
  Ryan Barnard [cre]
Maintainer: Ryan Barnard <rbarnard1107@gmail.com>
Built: R 4.5.2; ; 2025-11-11 16:45:09 UTC; windows
