G                       Ancestral allele frequencies from a snmf run
LEA-package             LEA: an R package for Landscape and Ecological
                        Associations studies.
Q                       Admixture coefficients from a snmf run
ancestrymap             'ancestrymap' format description
ancestrymap2geno        Convert from 'ancestrymap' to 'geno' format
ancestrymap2lfmm        Convert from 'ancestrymap' to 'lfmm' format
barchart                Bar plot representation of an snmf Q-matrix
create.dataset          create a data set with masked data
cross.entropy           Cross-entropy criterion for snmf runs
cross.entropy.estimation
                        compute the cross-entropy criterion
env                     Environmental input file format for 'lfmm'
genetic.gap             Genetic gap: genetic offset and genetic
                        distance between environments.
genetic.offset          Genetic offset and genetic distance between
                        environments.
geno                    Input file for 'snmf'
geno2lfmm               Convert from 'geno' to 'lfmm' format
impute                  Impute missing genotypes using an snmf object
lfmm                    Fitting Latent Factor Mixed Models (MCMC
                        algorithm)
lfmm.data               Input file for 'lfmm'
lfmm.pvalues            P-values from lfmm runs
lfmm2                   Fitting Latent Factor Mixed Models (Least
                        squares algorithm)
lfmm2.test              P-values adjusted for latent factors computed
                        by 'lfmm2'.
lfmm2geno               Convert from 'lfmm' to 'geno' format
offset_example          Example data for genetic offset analysis
pca                     Principal Component Analysis
ped                     'ped' format description
ped2geno                Convert from 'ped' to 'geno' format
ped2lfmm                Convert from 'ped' to 'lfmm' format
read.env                Read environmental file in the 'env'format
read.geno               read a file in the 'geno' format
read.lfmm               Read files in the 'lfmm' format
read.zscore             Read the output files of 'lfmm'
snmf                    Estimates individual ancestry coefficients and
                        ancestral allele frequencies.
snmf.pvalues            P-values for snmf population differentiation
                        tests
struct2geno             Conversion from the STRUCTURE format to the
                        geno format.
tracy.widom             Tracy-Widom test for eigenvalues
tutorial                Example tutorial data sets
vcf                     'vcf' format description
vcf2geno                Convert from 'vcf' to 'geno' format
vcf2lfmm                Convert from 'vcf' to 'lfmm' format
write.env               Write files in the 'env' format
write.geno              Write files in the 'geno' format
write.lfmm              Write files in the 'lfmm' format
z.scores                z-scores from an lfmm run
zscore.format           Output file format for 'lfmm'
