homosapienDEE2CellScore
This is the development version of homosapienDEE2CellScore; for the stable release version, see homosapienDEE2CellScore.
Example Data Package for CellScore
Bioconductor version: Development (3.22)
This is a data package for normalised homosapien data downloaded from DEE2. The package both downloads, normalises, and filters the data, and provides a way to access the data from a canonical store without needing local processing. This package was built as a way to generate and store canonical test data for CellScore.
Author: Justin Marsh [aut, cre]
Maintainer: Justin Marsh <j.marsh at auckland.ac.nz>
citation("homosapienDEE2CellScore")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("homosapienDEE2CellScore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("homosapienDEE2CellScore")| Use the Data in this Data Package | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, Genome, RNASeqData |
| Version | 1.5.0 |
| License | GPL (>= 3) |
| Depends | |
| Imports | Rtsne (>= 0.15), utils (>= 3.5.0), ExperimentHub, BiocGenerics, DESeq2, S4Vectors, SummarizedExperiment, getDEE2, MatrixGenerics |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/flaviusb/homosapienDEE2CellScore/issues |
See More
| Suggests | knitr, rmarkdown, devtools, Biobase(>= 2.39.1), BiocManager, AnnotationHubData, ExperimentHubData, AnnotationHub, CellScore(>= 1.21.4) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | homosapienDEE2CellScore_1.5.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/homosapienDEE2CellScore |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/homosapienDEE2CellScore |
| Package Short Url | https://bioconductor.org/packages/homosapienDEE2CellScore/ |
| Package Downloads Report | Download Stats |