Tian L, Su S, Dong X, Amann-Zalcenstein D, Biben C, Seidi A, Hilton D, Naik S, Ritchie M (2018). “scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data.” PLoS Computational Biology, 14(8), e1006361. doi:10.1371/journal.pcbi.1006361. https://doi.org/10.1371/journal.pcbi.1006361.

Amarasinghe S, Yang P, Voogd O, Yang H, Du M, Su S, Brown D, Jabbari J, Bowden R, Ritchie M (2023). “scPipe: an extended preprocessing pipeline for comprehensive single-cell ATAC-Seq data integration in R/Bioconductor.” NAR Genomics and Bioinformatics, 5(4), lqad105. ISSN 2631-9268. doi:10.1093/nargab/lqad105. https://doi.org/10.1093/nargab/lqad105.