Package: ternarynet
Version: 1.55.0
Date: 2024-02-19
Title: Ternary Network Estimation
Description: Gene-regulatory network (GRN) modeling seeks to infer
        dependencies between genes and thereby provide insight into the
        regulatory relationships that exist within a cell. This package
        provides a computational Bayesian approach to GRN estimation
        from perturbation experiments using a ternary network model, in
        which gene expression is discretized into one of 3 states: up,
        unchanged, or down). The ternarynet package includes a parallel
        implementation of the replica exchange Monte Carlo algorithm
        for fitting network models, using MPI.
Author: Matthew N. McCall <mccallm@gmail.com>, Anthony Almudevar
        <Anthony_Alumudevar@urmc.rochester.edu>, David Burton
        <David_Burton@urmc.rochester.edu>, Harry Stern
        <harry.stern@rochester.edu>
Authors@R: c(
  person("McCall","Matthew", 
         email="mccallm@gmail.com",
         role=c("aut","cre")),
  person("Almudevar","Anthony",
         email="Anthony_Almudevar@urmc.rochester.edu",
         role=c("aut")),
  person("Burton","David",
         email="David_Burton@urmc.rochester.edu",
         role=c("aut")),
  person("Stern","Harry",
         email="harry.stern@rochester.edu",
         role=c("aut")))
Depends: R (>= 4.0)
Imports: utils, igraph, methods, graphics, stats, BiocParallel
Suggests: testthat
Enhances: Rmpi, snow
License: GPL (>= 2)
biocViews: Software, CellBiology, GraphAndNetwork, Network, Bayesian
git_url: https://git.bioconductor.org/packages/ternarynet
git_branch: master
git_last_commit: 6fb06d2
git_last_commit_date: 2020-10-27
NeedsCompilation: yes
Packaged: 2025-10-30 13:41:19 UTC; root
Maintainer: McCall N. Matthew <mccallm@gmail.com>
Config/pak/sysreqs: libglpk-dev libxml2-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:10:20 UTC
RemoteUrl: https://github.com/bioc/ternarynet
RemoteRef: HEAD
RemoteSha: 404154202605cbe1d4a7cd4c9abd9ac096da4766
Built: R 4.6.0; x86_64-w64-mingw32; 2025-10-30 13:42:58 UTC; windows
Archs: x64
