fd79a73a3aadfe65d4d77ba52b75cda4 *CITATION
5d87bda274c720983ab345047e30b4d9 *DESCRIPTION
9e356c500adc31c63aa253d2628ce34c *INDEX
1ebbd3e34237af26da5dc08a4e440464 *LICENSE
0a5fdb6130ffd1e004ce89938d8037ab *Meta/Rd.rds
86d0636b4c700e416386835098fcba6f *Meta/features.rds
3b56b990d04275fd3fd7897afd01c6c8 *Meta/hsearch.rds
37bd9fe2195e950f1bc87aa1377191c1 *Meta/links.rds
97f67ef9744199f4667fdb686684a24c *Meta/nsInfo.rds
5282fa986a18e5223cc4d32a4aab1a5a *Meta/package.rds
116548a4005cc8aed61b266caa42c266 *Meta/vignette.rds
c651ac305408b99df185c05a23607d4b *NAMESPACE
2372455ac42d8fde78ba9be6a79187d0 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/bambu
552415c57386cb0fea18caf89f57b552 *R/bambu.rdb
1ce2288a64699f8f41a370b98fa5b605 *R/bambu.rdx
97cdc8074596784f350598aae54c3125 *R/sysdata.rdb
745ebf1f3ad3bfeddb2cf278b11db257 *R/sysdata.rdx
ebb7d3fd5ec8e755527a3bec06fb1efc *doc/bambu.R
0e93ae067b5b73c9df8f1e659fa5d181 *doc/bambu.Rmd
9f66a42f0a36ee68ea5f35b961cecf0d *doc/bambu.html
fc336ea40db59c6e1f8b3802b3e3f4f6 *doc/index.html
aa95917805efcfe9bc76e306208fec1a *extdata/Homo_sapiens.GRCh38.91.annotations-txdb_chr9_1_1000000.sqlite
123638b7a424504dabf19dade96a8868 *extdata/Homo_sapiens.GRCh38.91_chr9_1_1000000.gtf
378f0bb57e44dcf91cd44d879da21bd5 *extdata/Homo_sapiens.GRCh38.dna_sm.primary_assembly_chr9_1_1000000.fa
2653234c35fbb855d298bf75233e4962 *extdata/Homo_sapiens.GRCh38.dna_sm.primary_assembly_chr9_1_1000000.fa.fai
a9d06b3b5d44984714a8be7c5a2ba7c0 *extdata/SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.bam
d016a5e09abcc432c87abe2ffe502662 *extdata/SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.bam.bai
1e0b9d85e569271cd05ff2f37ba5c293 *extdata/SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000_readClassSe.rds
f63e9e0da4939329f1a49e9956885550 *extdata/annotateSpliceOverlapByDist_testQuery.rds
02a8ad14f3e6086aed9923bfb2fab191 *extdata/annotateSpliceOverlapByDist_testSubject.rds
13a80407a57f71343245bec367a73b39 *extdata/annotateSpliceOverlapsByDist_refoutput.rds
ee23de13c8071eb314df4ae49c43b818 *extdata/annotationGranges_txdb2Grch38_91_chr9_1_1000000.rds
bb13aaac275fde70e2f68238b41fc966 *extdata/annotationGranges_txdbGrch38_91_chr9_1_1000000.rds
b08742c210251be954952e2fce1990ca *extdata/defaultModels.rds
fd6041f096c58ab238bda428416f155c *extdata/distanceToAnnotations_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
916c6a26d96a75dee56694fb6b952a2c *extdata/extendedAnnotationGranges_txdbGrch38_91_chr9_1_1000000.rds
adacbc5861eccdb7641d1a7a261907b0 *extdata/readClassesStranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
a8e0274d4c91d2528abee7fb94c85985 *extdata/readClassesUnstranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
c75abfae5702007c478e889e3a0c8a10 *extdata/readGrgList_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
ddec6a66f7643a7b59bec9f8419bcc1e *extdata/read_class_ME.model
23ba1c31131c9ccc591f2bca3d5e67be *extdata/read_class_SE.model
56474106510b07313158241d98e2951d *extdata/seIsoReCombined_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
823b71e2129fc75c36836839b70d6f3d *extdata/seIsoReRef_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
a3c920614df5529c3dcf73cf94671c07 *extdata/seOutputCombined2_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
25141f7792c42f39e321da406b1a331b *extdata/seOutputCombinedExtended_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
99fac3b4254cca1240270774506779e6 *extdata/seOutputCombined_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
f7ac17a361e703e91c89ec04f82a54bd *extdata/seOutputExtended_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
1e7eec2e6863902fe42c63d5c420b14f *extdata/seOutput_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
656d9870557e5857388c36b8d1dd96a1 *extdata/seOutput_denovo_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
1dd3536a540c8059b90eebf59eea7583 *extdata/seOutput_distTable_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
8810a4f1a5daa33819c43554450b0977 *extdata/seOutput_lowMemoryMode_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
fdbc1c7f9a788fd83fac7f097857e8c6 *extdata/seOutput_trackReads_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
3810f62ddeac4f4edd2fd2f0f5f1136f *extdata/seReadClassBS_Stranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
3c5b2d02ea85fddac083e20cf36a5e30 *extdata/seReadClassStranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
8ab4b5c2ee06c4696c6d872c4c182019 *extdata/seReadClassUnstranded_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
fb21a9fc769f40213b39d5c5c8fd2dbf *extdata/seReadClass_SGNex_A549_directRNA_replicate5_run1_chr9_1_1000000.rds
aad0f4043a95b6c32f54c17cf3204c24 *extdata/standardJunctionModels_temp.txt
f2e58e77f6aa6156e05a673105963e66 *extdata/xgb_model_splice_junction_correction.txt
9abef86ffb62aaa349eb37ab3fb7db1c *extdata/xgb_predictions_splice_junction_correction.txt
82df353751fe0b2c61498e3cd2169493 *help/AnIndex
9390102a85d2164c19ed8234d183dd1f *help/aliases.rds
1d0aa61f1eaff3c5ba552b6616150997 *help/bambu.rdb
a201948230177c20e64210c25410d514 *help/bambu.rdx
5e04e096414964a7bc2a6183006d65b0 *help/paths.rds
5a0d9a92de6d7bba890b7ab7f8491689 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
11cde538c84e8755bb1d5148118bee3d *libs/x64/bambu.dll
6aef1bc01ece0db6fc13b401131e92fc *libs/x64/symbols.rds
