scDblFinder
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see scDblFinder.
scDblFinder
Bioconductor version: 3.10
Efficient identification of doublets in single-cell RNAseq directly from counts using overclustering-based generation of artifical doublets.
Author: Pierre-Luc Germain [cre, aut] 
Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>
Citation (from within R, enter
citation("scDblFinder")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scDblFinder")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scDblFinder")| scDblFinder | HTML | R Script |
| Reference Manual |
Details
| biocViews | Preprocessing, RNASeq, SingleCell, Software |
| Version | 1.1.8 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6) |
| Imports | igraph, Matrix, matrixStats, BiocParallel, BiocNeighbors, SummarizedExperiment, SingleCellExperiment, scran, scater, data.table, dplyr, ggplot2, randomForest, graphics, methods, stats, DelayedArray |
| System Requirements | |
| URL | https://github.com/plger/scDblFinder |
| Bug Reports | https://github.com/plger/scDblFinder/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scDblFinder_1.1.8.tar.gz |
| Windows Binary | scDblFinder_1.1.8.zip |
| Mac OS X 10.11 (El Capitan) | scDblFinder_1.1.8.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/scDblFinder |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scDblFinder |
| Bioc Package Browser | https://code.bioconductor.org/browse/scDblFinder/ |
| Package Short Url | https://bioconductor.org/packages/scDblFinder/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |