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DEGseq

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see DEGseq.

Identify Differentially Expressed Genes from RNA-seq data


Bioconductor version: 3.10

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author: Likun Wang <wanglk at hsc.pku.edu.cn> and Xi Wang <wang-xi05 at mails.tsinghua.edu.cn>.

Maintainer: Likun Wang <wanglk at hsc.pku.edu.cn>

Citation (from within R, enter citation("DEGseq")):

Installation

To install this package, start R (version "3.6") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DEGseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEGseq")
DEGseq PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software
Version 1.40.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License LGPL (>=2)
Depends R (>= 2.8.0), qvalue, methods
Imports graphics, grDevices, methods, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DEGseq_1.40.0.tar.gz
Windows Binary DEGseq_1.40.0.zip
Mac OS X 10.11 (El Capitan) DEGseq_1.40.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/DEGseq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/DEGseq
Bioc Package Browser https://code.bioconductor.org/browse/DEGseq/
Package Short Url https://bioconductor.org/packages/DEGseq/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive