To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Category")

In most cases, you don't need to download the package archive at all.

Category

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see Category.

Category Analysis

Bioconductor version: 3.1

A collection of tools for performing category analysis.

Author: R. Gentleman with contributions from S. Falcon and D.Sarkar

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("Category")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Category")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Category")

PDF	R Script	Using Categories to Analyze Microarray Data
PDF	R Script	Using Chromosome Bands as Categories
PDF		Reference Manual
Text		NEWS

biocViews	Annotation, GO, GeneSetEnrichment, Pathways, Software
Version	2.34.2
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 11 years)
License	Artistic-2.0
Depends	methods, stats4, Matrix, BiocGenerics(>= 0.13.8), AnnotationDbi, Biobase, GO.db
Imports	methods, utils, stats, stats4, BiocGenerics, graph, Biobase, AnnotationDbi, RBGL, GSEABase(>= 1.19.3), genefilter, annotate(>= 1.15.6)
LinkingTo
Suggests	EBarrays, ALL, Rgraphviz, RColorBrewer, xtable (>= 1.4-6), hgu95av2.db, KEGG.db, SNPchip, geneplotter, limma, lattice, graph, Biobase, genefilter, methods, RUnit, org.Sc.sgd.db, GOstats
SystemRequirements
Enhances
URL
Depends On Me	GOstats, meshr, PCpheno
Imports Me	categoryCompare, cellHTS2, eisa, gCMAP, GOstats, interactiveDisplay, PCpheno, phenoTest, ppiStats, RDAVIDWebService, ReportingTools
Suggests Me	BiocCaseStudies, cellHTS, GSEAlm, MmPalateMiRNA, qpgraph, RnBeads
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	Category_2.34.2.tar.gz
Windows Binary	Category_2.34.2.zip
Mac OS X 10.6 (Snow Leopard)	Category_2.34.2.tgz
Mac OS X 10.9 (Mavericks)	Category_2.34.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/Category/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/Category/
Package Downloads Report	Download Stats

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