Package	Download_score
IRanges	52515
flowCore	2888
AgiMicroRna	143
BSgenome	16702
genefilter	12720
Biobase	48556
deepSNV	165
GenomeGraphs	28
snpStats	2283
RankProd	296
ChAMP	613
seqCNA	43
illuminaio	3009
ProCoNA	16
BeadDataPackR	640
affy	8310
sva	7400
GeneRfold	4
MVCClass	108
genomeIntervals	188
biocViews	4337
topGO	3032
ensemblVEP	166
hyperdraw	123
AffyExpress	23
Ringo	285
MEDME	63
weaver	71
nucleR	87
fabia	191
cisPath	62
GRENITS	64
limmaGUI	87
lpNet	79
MiChip	63
mitoODE	17
MotifDb	668
GEOmetadb	255
CoCiteStats	67
BiocCaseStudies	23
MSstats	503
QuasR	360
IsoGeneGUI	22
gmapR	181
CAGEr	185
BicARE	143
BufferedMatrix	100
BiocParallel	41850
ArrayTV	21
flowMeans	164
clstutils	65
geneRecommender	66
SNAGEE	64
sigPathway	35
BHC	85
Roleswitch	20
TFBSTools	3442
anota	95
KCsmart	72
prebs	79
omicade4	172
OmicCircos	189
ontoCAT	14
PAPi	22
flagme	64
ASSET	114
rsbml	159
ADaCGH2	84
AffyCompatible	33
DECIPHER	2891
cycle	72
ampliQueso	15
ENVISIONQuery	18
jmosaics	10
gene2pathway	7
triplex	73
Rolexa	13
RNAither	24
TDARACNE	23
ReactomePA	2493
iSeq	59
SJava	6
GeneSelectMMD	113
CSAR	86
CMA	124
cnvGSA	75
pgUtils	5
asmn	5
VariantTools	177
BufferedMatrixMethods	71
frmaTools	86
hexbin	24
pairseqsim	3
ccrepe	107
metaMS	143
mmnet	13
TitanCNA	88
flowCL	23
cosmo	5
affydata	3
Seqnames	0
kebabs	151
GenomicInteractions	395
netbiov	34
methylPipe	136
geecc	13
genomation	673
tracktables	144
Rqc	268
metabomxtr	63
miRNAtap	162
SNPRelate	1627
compEpiTools	77
GenoView	3
GeneticsBase	5
CoRegNet	41
RUVnormalize	76
MBASED	62
GSReg	70
rRDP	72
gff3Plotter	2
arrayQCplot	2
TRONCO	79
Rgraphviz	9918
preprocessCore	14253
AnnotationDbi	36480
affyQCReport	29
annaffy	277
GenomicFeatures	20236
Gviz	3882
BrainStars	20
AnnotationForge	2321
DOSE	18340
tilingArray	153
Rbowtie	515
flowType	21
ddgraph	15
made4	272
GeneticsPed	108
MLInterfaces	438
Mfuzz	1270
les	102
mBPCR	67
keggorthology	198
EBImage	2719
piano	475
NormqPCR	168
HilbertVisGUI	45
synapter	144
wateRmelon	802
deltaGseg	63
goseq	1290
lol	14
LVSmiRNA	20
mdqc	109
metaSeq	75
MLP	159
MMDiff	13
PSICQUIC	28
fastseg	768
ecolitk	77
CNORdt	72
ReportingTools	687
UniProt.ws	426
girafe	101
GLAD	224
GlobalAncova	1120
GOFunction	22
GSVA	6453
chimera	25
ChIPpeakAnno	1039
antiProfiles	71
clusterProfiler	18700
BioNet	284
DEXSeq	1517
Agi4x44PreProcess	8
ExiMiR	68
TargetSearch	80
ChemmineR	830
EDASeq	1805
CGEN	70
ChromHeatMap	132
BiGGR	75
affycomp	104
DFP	73
PANR	63
affypdnn	23
BioMVCClass	71
SwimR	14
TurboNorm	73
motifStack	732
BCRANK	82
spade	13
procoil	68
proteinProfiles	58
PWMEnrich	203
RIPSeeker	31
rBiopaxParser	172
CNORfuzzy	77
ssize	102
MSnbase	3351
networkBMA	22
RTCA	69
spikeLI	56
exomePeak	23
timecourse	84
ITALICS	70
cleanUpdTSeq	113
clonotypeR	24
CoGAPS	315
daMA	66
CNAnorm	73
Resourcerer	9
tRanslatome	179
ReQON	47
cn.mops	266
coRNAi	17
flowUtils	45
epigenomix	70
iClusterPlus	379
ChemmineOB	318
flowTrans	97
genomes	82
snpMatrix	11
xmapcore	4
exonmap	6
COHCAP	54
Sushi	60
hiAnnotator	114
GeneOverlap	484
Clomial	62
GSCA	67
CNEr	3424
roar	69
unifiedWMWqPCR	48
DMRforPairs	27
MIMOSA	29
MLSeq	165
ontoTools	8
GSAR	105
edd	7
CFAssay	56
mygene	344
polyester	125
OncoSimulR	66
regionReport	136
mdgsa	13
pepStat	58
EnrichmentBrowser	591
FEM	24
interactiveDisplayBase	8971
Rnits	61
proBAMr	61
PAA	73
GOexpress	90
ASGSCA	66
ssviz	63
SGSeq	324
gQTLstats	16
limma	32383
annotate	18029
cghMCR	80
arrayQuality	139
Rsamtools	23929
DESeq	182
gcrma	1334
Rdisop	440
seqLogo	3795
widgetTools	1313
minfi	2451
HTSanalyzeR	24
BayesPeak	23
genoset	27
Vega	17
BiSeq	151
IPPD	19
easyRNASeq	194
ctc	284
Category	1876
pdInfoBuilder	125
affycoretools	400
Icens	480
HTSFilter	222
pkgDepTools	30
bumphunter	2833
bioDist	263
vbmp	93
Repitools	300
GOSim	109
isobar	91
ARRmNormalization	72
logicFS	94
macat	50
mgsa	113
BitSeq	28
HELP	66
hypergraph	172
spliceSites	19
SplicingGraphs	98
CGHbase	436
plgem	121
sagenhaft	64
SeqVarTools	449
PROcess	98
triform	22
TSSi	20
eiR	73
PCpheno	22
AnnotationFuncs	24
ExpressionView	23
BioSeqClass	22
paircompviz	68
customProDB	96
cobindR	19
aCGH	226
SIM	70
SimBindProfiles	54
iterativeBMA	70
CNTools	141
a4Base	161
biocGraph	218
STRINGdb	1202
ReadqPCR	213
RDRToolbox	137
OLIN	103
OLINgui	66
PING	82
qcmetrics	106
altcdfenvs	128
RDAVIDWebService	37
rama	22
snm	173
rqubic	91
dks	58
msmsTests	277
RbcBook1	112
flowMap	46
spkTools	64
spotSegmentation	18
BaseSpaceR	73
rfPred	63
birta	22
CNVtools	18
codelink	87
flowPhyto	8
RWebServices	7
NTW	63
GeneGroupAnalysis	4
CoverageView	74
messina	64
RefNet	17
VariantFiltering	97
COMPASS	87
cosmoGUI	6
Rcpi	121
Ruuid	7
biocDatasets	4
RMAGEML	5
groHMM	81
Pviz	84
derfinder	578
exonfindR	0
GenomicTuples	59
FourCSeq	14
MSGFplus	17
quantro	360
paxtoolsr	98
csaw	594
MSnID	295
derfinderHelper	576
oposSOM	92
riboSeq	0
nethet	73
mzR	3448
SeqArray	929
DESeq2	21745
zlibbioc	53113
ShortRead	6338
pcaMethods	5371
biovizBase	5510
HTqPCR	148
crlmm	287
ggbio	2152
minet	820
beadarray	732
RTopper	69
flowViz	1050
gCMAPWeb	18
fdrame	69
maanova	30
mzID	3209
PADOG	291
flowFlowJo	11
globaltest	1915
DynDoc	1307
miRNApath	72
puma	108
imageHTS	30
MassSpecWavelet	1945
idiogram	71
MassArray	59
SAGx	27
phyloseq	5553
r3Cseq	93
tigre	84
DeconRNASeq	244
prada	31
webbioc	74
RNASeqPower	159
gaia	28
LPE	98
metahdep	64
MiPP	72
GeneRegionScan	74
pvac	65
xps	21
GEOsubmission	73
GGBase	27
graphite	3068
GWASTools	610
h5vc	97
HEM	66
geNetClassifier	154
ArrayExpress	444
qrqc	29
quantsmooth	625
pathifier	112
iBMQ	53
PLPE	66
plrs	17
ArrayExpressHTS	24
bioassayR	81
DirichletMultinomial	4794
ACME	98
GeneMeta	112
twilight	117
DriverNet	64
IdMappingRetrieval	20
NCIgraph	120
eisa	22
beadarraySNP	53
bgafun	19
a4	95
pcaGoPromoter	19
TypeInfo	61
REDseq	100
SamSPECTRAL	155
pickgene	59
trio	109
OCplus	89
pcot2	23
iPAC	138
RchyOptimyx	20
SeqGSEA	192
splicegear	19
spliceR	19
SBMLR	75
ChIPsim	91
CorMut	18
CORREP	49
rbsurv	79
clst	98
NetSAM	95
multiscan	64
iChip	66
joda	18
segmentSeq	82
genefu	423
ChIPseqR	95
copa	68
CSSP	24
domainsignatures	18
trackViewer	523
ChIPXpress	95
flowBeads	71
CRISPRseek	167
simulatorAPMS	4
INPower	69
Rariant	21
CAFE	81
scsR	18
BiocCheck	1649
Rdbi	8
PECA	71
rpx	303
BEAT	69
viper	718
rflowcyt	6
FlowSOM	1111
switchBox	123
HDTD	53
monocle	3169
ALDEx2	1197
missMethyl	1001
facopy	8
DEGreport	614
PSEA	44
COSNet	58
pamr	8
shinyMethyl	119
STATegRa	66
flowCHIC	66
fbat	5
IMPCdata	53
pxr	0
PROPER	93
pRoloc	268
SCAN.UPC	159
GOstats	1705
affxparser	1630
biomaRt	23711
multtest	12651
marray	1932
MANOR	68
cummeRbund	237
qvalue	17557
GOSemSim	17389
RBGL	9505
frma	154
chipenrich	165
vsn	5282
aroma.light	2004
RRHO	95
geneplotter	6255
flowClust	825
phenoDist	16
OrganismDbi	3216
affyPara	25
neaGUI	9
siggenes	3498
Rtreemix	72
SLqPCR	72
a4Core	175
SPIA	645
RPA	113
hpar	275
TransView	64
dexus	24
RSVSim	72
bridge	23
SRAdb	429
Harshlight	82
HMMcopy	293
PICS	124
KEGGprofile	28
MCRestimate	21
MergeMaid	24
metaArray	22
MethylSeekR	143
MmPalateMiRNA	22
msmsEDA	289
copynumber	133
attract	86
occugene	59
gprege	19
GraphAT	77
hapFabia	67
htSeqTools	22
sizepower	77
ppiStats	26
Starr	21
cellHTS2	228
xmapbridge	64
chipseq	640
iterativeBMAsurv	61
ArrayTools	26
sRAP	19
AGDEX	74
apComplex	78
EasyqpcR	19
factDesign	72
DSS	877
yaqcaffy	22
FunciSNP	20
affyContam	129
genArise	66
betr	16
pint	16
waveTiling	22
BAGS	77
OTUbase	72
pathRender	74
plethy	27
RBioinf	72
qusage	405
safe	654
maDB	7
nem	26
RCASPAR	58
SQUADD	46
SigFuge	67
inveRsion	19
Streamer	72
diffGeneAnalysis	65
BUS	67
clipper	103
annmap	119
stepNorm	64
flowPlots	65
intansv	87
farms	46
GeneticsDesign	20
DBChIP	23
coGPS	66
dagLogo	92
bsseq	1469
CGHregions	94
FGNet	119
GeneExpressionSignature	90
iFlow	4
NetPathMiner	65
ABSSeq	126
GenomicFiles	1333
sangerseqR	941
ChIPQC	366
CopyNumber450k	9
PhenStat	66
alsace	18
QDNAseq	378
savR	25
makePlatformDesign	5
arrayMagic	4
SemSim	4
NGScopy	10
derfinderPlot	153
RUVSeq	941
seqTools	125
SigCheck	65
ClassifyR	345
M3D	12
MGFM	68
mvGST	7
flowcatchR	74
Rintact	3
mQTL.NMR	9
specL	66
iSPlot	3
rgsepd	55
gQTLBase	17
ChromoViz	4
cpvSNP	65
xcms	1890
GEOquery	9483
GSEABase	8971
predictionet	18
affyio	8354
RCytoscape	16
GenomicRanges	44170
methylumi	1522
VariantAnnotation	12351
rhdf5	20040
KEGGgraph	5610
RNAinteract	86
ncdfFlow	1135
flowFit	20
OutlierD	23
clusterStab	89
CellNOptR	197
SNPchip	28
Heatplus	455
TCC	212
metagenomeSeq	1696
affyILM	90
arrayQualityMetrics	485
DEGraph	72
tspair	24
Risa	146
ddCt	99
KEGGREST	37033
Rchemcpp	17
LBE	227
maSigPro	263
maskBAD	69
matchBox	62
MeasurementError.cor	61
PROMISE	112
exomeCopy	285
PAnnBuilder	21
GEWIST	57
goProfiles	135
goTools	73
HilbertVis	189
iBBiG	128
categoryCompare	82
ConsensusClusterPlus	3056
plw	22
NOISeq	602
AffyRNADegradation	71
GeneNetworkBuilder	84
RmiR	21
CAMERA	506
agilp	99
GeneAnswers	28
annotationTools	136
DiffBind	1083
gaggle	49
gaga	115
gCMAP	21
snapCGH	104
sigaR	20
ABarray	93
a4Reporting	123
VegaMC	62
RamiGO	15
pvca	251
qpcrNorm	75
qpgraph	189
a4Preproc	183
cleaver	211
BiRewire	130
GenomicAlignments	24379
RMAPPER	7
staRank	68
CGHcall	398
sscore	34
rTRM	178
BAC	22
EBcoexpress	83
flowMerge	148
Rcade	25
CNORfeeder	79
ternarynet	61
rTRMui	67
flipflop	18
matchprobes	4
nudge	15
NarrowPeaks	21
AtlasRDF	11
GenomeInfoDb	58312
S4Vectors	56916
ELBOW	18
GOTHiC	85
fastLiquidAssociation	63
flowBin	74
UNDO	72
flowCyBar	60
geneRxCluster	71
RTools4TB	3
BeadExplorer	3
AnnBuilder	5
MethylMix	100
MPFE	51
MBAmethyl	47
Polyfit	14
ToPASeq	12
BridgeDbR	83
hiReadsProcessor	72
SemDist	56
Pbase	14
rain	98
DupChecker	8
saps	3
MEIGOR	62
proteoQC	13
AnalysisPageServer	11
MAIT	108
pRolocGUI	94
RSNPper	4
SAGElyzer	4
QuartPAC	67
seqbias	74
graph	18943
rtracklayer	21641
BiocGenerics	57035
DNAcopy	5169
oligoClasses	1720
edgeR	23470
baySeq	463
lumi	1202
simpleaffy	104
EBSeq	394
tkWidgets	1313
ROC	1083
ASEB	71
RTN	181
RMassBank	111
DART	71
VanillaICE	237
flowStats	515
rols	466
affyPLM	1132
inSilicoMerging	17
GGtools	29
SPEM	85
plateCore	20
AffyTiling	15
maCorrPlot	63
MantelCorr	58
rnaSeqMap	23
Genominator	24
HiTC	142
iASeq	59
LiquidAssociation	93
lmdme	64
logitT	33
makecdfenv	187
mcaGUI	21
MEDIPS	119
methylMnM	81
MineICA	84
MinimumDistance	92
MiRaGE	76
GraphAlignment	66
GSEAlm	89
HCsnip	14
HybridMTest	136
PREDA	90
Clonality	29
cancerclass	155
trigger	71
MotIV	35
QUALIFIER	22
AnnotationHub	11715
OrderedList	85
RefPlus	47
PGSEA	58
casper	70
clippda	74
flowQB	23
BRAIN	125
charm	24
GeneSelector	20
parody	110
SLGI	26
CRImage	90
motifRG	20
XDE	82
bgx	77
panp	84
PathNet	74
phenoTest	144
R453Plus1Toolbox	86
RpsiXML	27
DAVIDQuery	10
RedeR	338
NuPoP	75
RLMM	62
Rmagpie	76
CNORode	96
flowMatch	77
DEDS	20
supraHex	476
Rsubread	2266
DASiR	11
explorase	19
randPack	65
vtpnet	85
BADER	71
ibh	62
IdMappingAnalysis	17
CNVrd2	71
GENE.E	15
SpacePAC	105
SMAP	48
netresponse	80
BGmix	22
ROntoTools	218
cn.farms	71
CGHnormaliter	78
DrugVsDisease	144
flowFP	169
CALIB	24
KEGGSOAP	11
biosvd	19
HTSeqGenie	59
metaseqR	24
compcodeR	89
nondetects	62
npGSEA	70
sapFinder	18
FRGEpistasis	63
CompGO	17
COPDSexualDimorphism	4
massiR	66
msQC	0
ASSIGN	123
MoPS	11
flowDensity	271
DOQTL	13
seqplots	18
flowClean	206
ballgown	662
IdeoViz	74
focalCall	10
MSGFgui	14
EBSeqHMM	43
systemPipeR	1190
erccdashboard	83
GOsummaries	49
RGSEA	74
GeneSpring	6
Biostrings	47371
impute	10628
BiocInstaller	381
XVector	49077
arrayMvout	74
rTANDEM	22
hopach	342
plier	124
oligo	1695
pathview	4489
ScISI	29
virtualArray	8
SomatiCA	14
methyAnalysis	26
splots	215
flowWorkspace	1270
rGADEM	310
sSeq	180
flowQ	16
gpls	223
chroGPS	20
GraphPAC	110
GSRI	71
oneChannelGUI	24
lapmix	63
LMGene	21
LPEadj	43
maigesPack	47
manta	19
maPredictDSC	67
MBCB	62
methVisual	20
microRNA	164
mosaics	162
flowPeaks	184
survcomp	1181
GeneR	8
convert	153
cqn	302
gwascat	652
EBarrays	226
interactiveDisplay	109
TargetScore	75
bigmemoryExtras	19
pdmclass	18
tweeDEseq	153
CancerMutationAnalysis	22
RGalaxy	23
CexoR	73
AllelicImbalance	108
BiocStyle	6243
rMAT	18
genoCN	62
a4Classif	125
SSPA	75
TEQC	84
gage	834
biomvRCNS	72
openCyto	670
OSAT	85
prot2D	15
affylmGUI	100
stepwiseCM	15
reb	20
SpeCond	79
inSilicoDb	16
DEGseq	164
DTA	89
DNaseR	6
dyebias	71
cellGrowth	18
iontree	17
shinyTANDEM	17
nnNorm	67
Mulcom	80
rHVDM	19
SANTA	56
Cormotif	75
adSplit	83
cellHTS	16
epivizr	138
ffpe	79
GeneGA	57
chopsticks	100
GeneTS	4
fmcsR	276
rSFFreader	13
GeneTraffic	5
dualKS	24
externalVector	6
MeSHDbi	266
meshr	148
ChIPseeker	1843
gaucho	15
DMRcate	932
Rredland	3
Mirsynergy	16
SomaticSignatures	184
EDDA	20
Basic4Cseq	75
MethylAid	99
blima	64
RdbiPgSQL	5
PatientGeneSets	3
simulatorZ	13
wavClusteR	69
metagene	29
MultiMed	61
riboSeqR	64
cosmiq	112
Metab	71
STAN	19
pepXMLTab	65
gespeR	89
TSCAN	657
AIMS	421
keggorth	4
stam	4
BEclear	77
diffHic	112
ENCODExplorer	12
EMDomics	77
GENESIS	358
BrowserVizDemo	4
RCyjs	78
podkat	67
traseR	60
INSPEcT	75
dupRadar	119
lfa	292
DAPAR	142
goCluster	1
caOmicsV	10
SICtools	51
dcGSA	57
EnrichedHeatmap	575
TimerQuant	0
R4RNA	642
CODEX	115
FISHalyseR	56
birte	9
CAnD	14
FlowRepositoryR	14
seqPattern	734
SIMAT	62
SVM2CRM	9
TIN	57
TPP	105
mAPKL	17
OperaMate	4
erma	103
ChIPComp	70
Path2PPI	64
rCGH	119
RareVariantVis	68
AnnotationHubData	371
GEOsearch	5
hierGWAS	66
Imetagene	11
Prostar	87
exprExternal	1
RCy3	967
systemPipeRdata	0
globalSeq	58
gdsfmt	2065
coMET	85
edge	105
R3CPET	61
BrowserViz	174
gtrellis	135
InPAS	74
LEA	527
LowMACA	19
parglms	56
CausalR	68
ldblock	92
mmgmos	3
mtbls2	0
Oscope	94
RTCGA	560
FindMyFriends	15
gcatest	73
miRcomp	61
eudysbiome	54
sidap	0
Cardinal	191
ComplexHeatmap	14800
DMRcaller	89
SELEX	67
sigsquared	59
MeSHSim	5
regioneR	2017
rGREAT	665
msa	1610
MethTargetedNGS	58
OmicsMarkeR	10
TCGAbiolinks	3858
widgetInvoke	4
HilbertCurve	98
ProteomicsAnnotationHubData	14
SNPhood	67
Guitar	134
LOLA	298
DChIPRep	13
GeneBreak	70
multiClust	93
cogena	90
seq2pathway	170
sincell	66
similaRpeak	65
rcellminer	77
Rhtslib	25065
pwOmics	162
immunoClust	73
mogsa	206
pandaR	132
RTCGAToolbox	557
variancePartition	952
rnaseqcomp	68
bim	2
mirIntegrator	73
motifbreakR	215
SISPA	22
TarSeqQC	17
GUIDEseq	86
GenomeBase	2
rfcdmin	2
ABAEnrichment	15
CNPBayes	9
LedPred	51
scde	363
FamAgg	81
ggtree	20908
canceR	100
chromDraw	63
CopywriteR	30
soGGi	349
SummarizedExperiment	39016
GoogleGenomics	8
HIBAG	128
NanoStringQCPro	36
muscle	336
pmm	63
acde	71
IONiseR	81
destiny	681
XBSeq	13
iSNetwork	3
applera	2
reposTools	2
genotypeeval	20
lpsymphony	1029
sbgr	2
SWATH2stats	64
DNABarcodes	170
MEAL	88
biobroom	211
SNAData	2
kimod	8
normalize450K	55
bamsignals	1079
ENmix	239
ensembldb	10209
flowVS	105
skewr	54
ProtGenerics	11977
RBM	65
RnaSeqSampleSize	101
RnBeads	292
netbenchmark	11
DeMAND	54
PGA	14
ropls	1240
iGC	63
miRLAB	78
SEPA	8
iCheck	62
myvariant	89
biomformat	5590
pathVar	23
NanoStringDiff	94
OGSA	10
BioQC	125
iCOBRA	214
profileScoreDist	54
BubbleTree	79
conumee	165
cytofkit	24
diggit	60
RUVcorr	63
RNAprobR	11
GreyListChIP	1017
IVAS	85
MatrixRider	68
ELMER	180
synlet	54
metaX	3
Prize	10
CNVPanelizer	68
subSeq	73
fCI	59
y2hStat	2
DiffLogo	71
BBCAnalyzer	65
metagenomeFeatures	13
RiboProfiling	97
consensusSeekeR	103
transcriptR	77
scran	4823
splineTCDiffExpr	1
HDF5Array	13799
SwathXtend	72
dada2	2268
AneuFinder	94
contiBAIT	49
CrispRVariants	140
DRIMSeq	309
epivizrServer	147
ImmuneSpaceR	56
Linnorm	233
miRNAmeConverter	64
PanVizGenerator	13
Mergeomics	70
netprioR	53
covRNA	63
Director	49
MADSEQ	62
maftools	2552
RCAS	148
SNPediaR	56
SPLINTER	66
MoonlightR	86
yamss	67
psichomics	79
fCCAC	63
flowPloidy	70
CancerInSilico	21
samExploreR	10
SMITE	63
ExpressionAtlas	210
ggcyto	890
debrowser	176
DEFormats	254
doppelgangR	180
IHW	702
qsea	70
MultiDataSet	1289
pbcmc	7
GSALightning	56
iCARE	144
LymphoSeq	72
fgsea	17202
FunChIP	53
geneplast	108
CancerSubtypes	90
ImpulseDE	8
MODA	64
ASAFE	59
eegc	87
StarBioTrek	46
MAST	2113
KEGGlincs	75
LINC	11
SIMLR	249
GOpro	160
chimeraviz	113
scater	7196
EWCE	197
ExperimentHubData	298
cellity	69
CINdex	73
clustComp	68
EGAD	70
EGSEA	189
epivizrStandalone	68
tximport	3421
tofsims	12
CytoML	459
genphen	12
Glimma	1184
isomiRs	174
MethPed	60
MMDiff2	58
normr	139
alpine	37
BiocWorkflowTools	176
proFIA	17
philr	180
yarn	136
anamiR	9
CCPROMISE	68
BUMHMM	86
ramwas	131
diffloop	30
flowAI	559
ccmap	84
clusterExperiment	344
JunctionSeq	16
ISoLDE	49
OncoScore	71
PCAN	63
DeepBlueR	39
recount	406
ASpli	108
GRmetrics	90
bigmelon	71
M3Drop	663
MetaboSignal	130
YAPSA	92
matter	224
synergyfinder	206
gCrisprTools	66
TVTB	70
EpiCluster	0
gcapc	61
DelayedArray	42402
sparseDOSSA	33
coseq	147
sscu	55
CountClust	15
BatchQC	110
EBSEA	56
epivizrData	139
pcaExplorer	463
GenVisR	277
rDGIdb	82
QUBIC	147
pqsfinder	107
psygenet2r	87
AMOUNTAIN	100
MetCirc	81
covEB	56
methylKit	642
chromstaR	94
geneAttribution	69
annotatr	480
clusterSeq	62
ROTS	218
sevenbridges	71
ExperimentHub	7619
garfield	62
cellTree	17
chromPlot	192
EmpiricalBrownsMethod	137
BgeeDB	134
nucleoSim	61
oppar	69
Uniquorn	63
dSimer	9
esetVis	75
switchde	61
LOBSTAHS	102
MGFR	72
CVE	9
phosphonormalizer	53
geneXtendeR	113
statTarget	101
MutationalPatterns	325
uSORT	64
CellMapper	69
BaalChIP	66
HelloRanges	138
MWASTools	164
IWTomics	72
RJMCMCNucleosomes	63
SpidermiR	73
Chicago	96
CHRONOS	67
ClusterSignificance	62
bacon	111
biosigner	98
MultiAssayExperiment	5911
QuaternaryProd	77
recoup	63
MBttest	56
PureCN	167
RImmPort	50
GMRP	60
Harman	178
metaCCA	163
crossmeta	180
bioCancer	79
NetCRG	0
Pigengene	125
SVAPLSseq	9
GAprediction	64
IPO	159
GeneGeneInteR	61
BayesKnockdown	61
ctsGE	64
meshes	157
PharmacoGx	273
readat	10
regsplice	58
DEsubs	63
FitHiC	73
Anaquin	62
treeio	20024
RnaSeqGeneEdgeRQL	2
SC3	376
splineTimeR	75
InteractionSet	1940
genbankr	100
DNAshapeR	82
BadRegionFinder	64
BasicSTARRseq	63
GenoGAM	14
GenRank	8
RGraph2js	61
odseq	68
CONFESS	80
GEM	62
msPurity	82
sights	60
SRGnet	10
crisprseekplus	31
PathoStat	123
signeR	82
BPRMeth	104
Pi	64
GRridge	16
scone	115
scDD	139
cellscape	54
goSTAG	68
GenomicDataCommons	1157
RTNduals	90
TSRchitect	15
timescape	82
ideal	104
IntEREst	78
flowTime	69
Logolas	11
MaxContrastProjection	11
pathprint	9
Organism.dplyr	434
basecallQC	72
beachmat	15753
EpiDISH	631
mfa	94
IntramiRExploreR	56
ANF	57
TFARM	55
seqcombo	60
cbaf	68
esATAC	94
MetaCyto	81
gep2pep	59
omicsPrint	65
LineagePulse	36
heatmaps	291
branchpointer	86
PPInfer	176
rqt	51
swfdr	70
netReg	9
banocc	85
GA4GHclient	115
geneClassifiers	54
DMRScan	52
metavizr	16
CEMiTool	142
diffuStats	76
SCnorm	110
oneSENSE	22
SingleCellExperiment	15346
coexnet	15
miRsponge	8
trena	29
seqCAT	69
amplican	90
ivygapSE	57
geoquery	1
biobase	1
PROPS	59
chromswitch	22
restfulSE	144
transcriptogramer	69
rhvdm	0
affyplm	0
REMP	75
splatter	464
STROMA4	30
twoddpcr	61
hicrep	12
BioCor	84
motifcounter	63
ChIPexoQual	73
Rhdf5lib	24393
methInheritSim	75
TReNA	2
GA4GHshiny	71
motifmatchr	1358
Scale4C	68
RVS	56
DASC	2
BiocSklearn	76
AUCell	2348
ChIPanalyser	69
InterMineR	93
TFHAZ	60
iterClust	43
methyvim	11
multiMiR	235
oncomix	56
vulcan	71
semisup	54
AnnotationFilter	10993
TCseq	187
MIGSA	17
EventPointer	73
methylInheritance	68
ATACseqQC	376
epivizrChart	66
phenopath	91
scmap	244
miRBaseConverter	104
ndexr	73
panelcn.mops	85
SeqSQC	140
openPrimeRui	65
ontoProc	279
iranges	1
biostrings	1
TnT	36
rhdf5client	158
runibic	80
stageR	181
tenXplore	51
GenomicScores	708
RITAN	76
RIVER	59
sampleClassifier	71
GISPA	41
CATALYST	558
IMAS	64
karyoploteR	858
multiOmicsViz	41
NADfinder	67
discordant	86
epiNEM	153
HiCcompare	277
GENIE3	1202
zFPKM	112
IsoformSwitchAnalyzeR	265
DEP	514
SPONGE	53
cytolib	2776
chromVAR	1150
apeglm	3567
openPrimeR	160
PathwaySplice	9
scPipe	140
pcxn	52
topdownr	81
TFEA.ChIP	77
RaggedExperiment	922
TCGAbiolinksGUI	27
pgca	52
ImpulseDE2	15
MCbiclust	60
OPWeight	57
scoreInvHap	65
Onassis	13
RTNsurvival	66
MSstatsQC	84
BASiCS	165
Rbowtie2	301
scfind	8
TMixClust	76
DelayedMatrixStats	16287
rexposome	105
bnbc	174
anota2seq	83
JASPAR2018	3
methimpute	67
annbuilder	0
loci2path	64
MAGeCKFlute	378
cydar	96
DaMiRseq	126
funtooNorm	67
mimager	71
biotmle	64
BiocFileCache	26537
consensusOV	124
Doscheda	67
M3C	705
miRmine	41
MIRA	121
shortread	0
GOfuncR	337
flowclust	0
POST	10
BLMA	76
BioMedR	4
wiggleplotr	179
mapscape	55
msgbsR	69
cellbaseR	84
zinbwave	947
ClusterJudge	62
RProtoBufLib	2736
DMCHMM	58
microbiome	1705
IrisSpatialFeatures	5
slalom	150
biocinstaller	2
bsgenome	0
mpra	67
progeny	434
bcSeq	65
MetaNeighbor	95
signet	8
enrichplot	17867
srnadiff	66
decontam	1708
CAGEfightR	218
CHARGE	8
MSstatsQCgui	49
singscore	1413
InTAD	61
igvR	119
LRBaseDbi	125
mCSEA	111
RSeqAn	99
CellTrails	61
Rmmquant	61
MetaGxOvarian	3
appreci8R	97
miRSM	48
ipdDb	160
DEqMS	234
MPRAnalyze	72
compartmap	34
annotationdbi	1
dnacopy	1
rScudo	57
pogos	64
scruff	73
slingshot	1493
dmrseq	212
hipathia	178
SummarizedBenchmark	45
FELLA	133
singleCellTK	294
sevenC	57
phantasus	201
CAMTHC	5
perturbatr	9
methylGSA	120
SIMD	56
sparsenetgls	52
COCOA	80
HiCBricks	151
ProteoMM	84
RNASeqR	10
artMS	84
tRNAdbImport	121
rbgl	1
tkwidgets	1
genomicfeatures	1
DelayedDataFrame	68
deco	12
plpe	0
seqlogo	0
DropletUtils	2612
omicplotR	64
kissDE	67
TissueEnrich	212
ccfindR	96
SEPIRA	24
SIAMCAT	126
iSEE	471
DominoEffect	65
iCNV	66
rWikiPathways	400
GeneAccord	11
SparseSignatures	63
onlineFDR	48
tximeta	1121
hierinf	47
MetID	57
countsimQC	239
levi	50
topgo	0
PrecisionTrialDrawer	9
ChIPSeqSpike	12
RcisTarget	870
Trendy	64
PowerExplorer	9
CytoDx	80
RNAdecay	44
GDSArray	192
martini	61
kmknn	0
RGMQL	54
mdp	58
Rgin	9
GSEABenchmarkeR	86
coRdon	183
HPAanalyze	130
NormalyzerDE	173
snpmatrix	1
FCBF	44
OMICsPCA	68
IsoCorrectoR	118
LoomExperiment	619
MTseeker	4
powerTCR	357
hmdbQuery	78
Sconify	60
BiocVersion	60005
netSmooth	69
TCGAutils	855
DEsingle	250
TxRegInfra	10
diffcyt	422
tRNAscanImport	78
OUTRIDER	212
strandCheckR	58
maser	133
ACE	94
plyranges	1278
Ularcirc	69
GIGSEA	50
ERSSA	63
roma	1
KinSwingR	58
glmSparseNet	191
MSstatsTMT	295
bayNorm	87
genomicranges	0
abseqR	63
universalmotif	621
transite	67
degseq	1
decompTumor2Sig	137
scTensor	128
ADAM	170
IsoCorrectoRGUI	62
DNABarcodeCompatibility	49
MACPET	13
diffcoexp	211
SDAMS	60
missRows	57
seqsetvis	83
DEScan2	73
GateFinder	66
GARS	65
TFutils	86
qPLEXanalyzer	76
ChIC	17
vidger	116
REBET	56
multiHiCcompare	169
SCBN	91
condcomp	4
INDEED	48
BiocNeighbors	10757
pkgdeptools	0
mixOmics	2697
tRNA	146
PepsNMR	139
CTDquerier	60
omicRexposome	65
GDCRNATools	307
drawProteins	211
DEComplexDisease	13
iteremoval	11
adaptest	7
OmaDB	243
BiocOncoTK	80
brainImageR	3
BEARscc	60
EnhancedVolcano	4509
TTMap	61
MetNet	58
NBSplice	12
IMMAN	55
MDTS	53
RandomWalkRestartMH	99
mlm4omics	4
nuCpos	55
iasva	69
XINA	48
FoldGO	33
breakpointR	65
edger	1
ExCluster	48
AffiXcan	61
QSutils	98
cTRAP	74
BDMMAcorrect	31
Wrench	1686
gostats	1
bayseq	1
cntools	1
gsean	66
CellScore	59
BiFET	63
scFeatureFilter	55
BUScorrect	57
BioNetStat	84
ddPCRclust	78
ORFik	200
ASICS	94
consensus	54
icetea	60
GeneStructureTools	88
gwasurvivr	96
slinky	8
sesame	791
celaref	75
sigFeature	228
scmeth	73
FastqCleaner	87
BiocPkgTools	154
plotGrouper	53
primirTSS	61
cicero	218
HIREewas	54
gpart	18
TimeSeriesExperiment	12
AssessORF	114
NeighborNet	22
consensusDE	71
category	1
rgraphviz	2
logitt	1
VCFArray	66
CNVRanger	122
TNBC.CMS	45
netboost	46
batchelor	3949
miRspongeR	43
PoTRA	9
SpatialCPie	77
SMAD	54
scRecover	59
CellMixS	81
scMerge	562
DeMixT	100
epihet	11
qckitfastq	71
AlphaBeta	58
RNAmodR	118
gramm4R	5
deltaCaptureC	56
Autotuner	8
SQLDataFrame	55
TOAST	397
CNVfilteR	65
HCAExplorer	5
ASpediaFI	9
idr2d	58
scPCA	93
RCM	67
BiocSingular	12457
fishpond	258
gpuMagic	56
ngsReports	77
survtype	57
GNET2	54
profileplyr	227
Structstrings	161
Rcwl	108
SubCellBarCode	60
proBatch	25
metagene2	72
DiscoRhythm	68
alevinQC	87
SingleR	4117
muscat	495
brendaDb	57
scBFA	62
RNAmodR.AlkAnilineSeq	67
biscuiteer	73
scTGIF	198
CrossICC	3
DMCFB	56
scGPS	86
MOSim	61
MMUPHin	135
mitch	65
geometadb	0
arrayexpress	1
MOFA	7
phemd	31
TPP2D	57
VennDetail	251
CHETAH	98
bigPint	24
evaluomeR	60
qsmooth	187
Maaslin2	1030
XCIR	7
MACSQuantifyR	46
SharedObject	159
oppti	49
ssPATHS	49
onechannelgui	0
selectKSigs	54
PAIRADISE	89
Rhisat2	227
Modstrings	210
ssrch	82
pipeFrame	167
CoRegFlux	4
celda	731
topconfects	177
SpectralTAD	84
PAST	51
infercnv	1094
RcwlPipelines	106
PrInCE	63
adductomicsR	62
calm	47
KnowSeq	62
AWFisher	65
GenomicOZone	78
microbiomeDASim	63
SigsPack	57
pwrEWAS	24
RNAsense	50
tradeSeq	515
debCAM	64
MethCP	9
cliqueMS	128
flowSpy	5
methylCC	74
MSstatsSampleSize	18
rsamtools	0
SynMut	54
DepecheR	71
pram	60
GAPGOM	11
OmicsLonDA	17
pathwayPCA	79
sRACIPE	68
mnem	158
OVESEG	68
animalcules	173
cytofast	6
atSNP	82
circRNAprofiler	78
MetaVolcanoR	51
HCABrowser	6
proDA	246
SCANVIS	65
chippeakanno	0
fcoex	69
SAIGEgds	92
gscreend	48
iterativebmasurv	0
arrayqualitymetrics	0
sojourner	13
blacksheepr	71
flowSpecs	80
brainflowprobes	46
ReactomeGSA	230
BiocSet	290
cummerbund	1
geneticsbase	0
graper	55
StructuralVariantAnnotation	227
RepViz	109
sitePath	60
cola	129
hypeR	96
rmelting	68
enrichTF	63
CellBench	131
AMARETTO	170
BioMM	15
dcanr	146
Melissa	56
SBGNview	207
HiLDA	76
IgGeneUsage	53
fcScan	67
MMAPPR2	20
VariantExperiment	51
RNAmodR.ML	60
gemini	55
schex	231
methrix	88
ALPS	6
DEWSeq	63
SEtools	186
GmicR	68
gseabase	0
OmnipathR	565
scDblFinder	1512
LinkHD	60
MEB	52
MBQN	60
ceRNAnetsim	51
CluMSID	70
mbkmeans	427
NBAMSeq	141
scAlign	16
CopyNumberPlots	160
TreeSummarizedExperiment	1800
divergence	49
nanotatoR	93
projectR	111
BANDITS	117
lipidr	187
HumanTranscriptomeCompendium	53
BUSpaRse	210
ncGTW	96
PhyloProfile	79
GladiaTOX	54
RNAmodR.RiboMethSeq	69
waddR	54
Spaniel	82
signatureSearch	233
BioTIP	77
pulsedSilac	7
netboxr	10
biomart	0
widgettools	1
PCAtools	1233
ADAMgui	99
Xeva	118
scds	516
doseR	55
ViSEAGO	134
Qtlizer	57
GCSscore	20
PERFect	34
peakPantheR	63
lionessR	57
APAlyzer	76
target	59
dearseq	210
rhdf5filters	19397
ROSeq	58
rfaRm	48
AnVIL	566
methylSig	80
eisaR	116
DIAlignR	57
scTHI	49
spqn	51
structToolbox	113
PeacoQC	236
hummingbird	49
wpm	61
escape	421
Rfastp	146
uncoverappLib	63
SCATE	68
FScanR	21
ANCOMBC	1242
FilterFFPE	62
tidySingleCellExperiment	217
tomoda	54
sigpathway	1
mina	47
bnem	65
BumpyMatrix	556
mumosa	73
parallel	1
tcltk	1
ttgsea	88
PoDCall	49
basilisk.utils	3890
omicsmarker	0
prostar	0
rlang	453
DAMEfinder	63
multicrispr	63
RNAAgeCalc	75
BgeeCall	50
sparseMatrixStats	15611
dpeak	21
combi	91
CARNIVAL	146
cytomapper	330
TBSignatureProfiler	72
GGPA	50
SimFFPE	50
weitrix	57
peco	52
metaseqR2	71
simplifyEnrichment	826
ctgGEM	7
multiGSEA	141
MouseFM	155
QFeatures	2034
SpatialExperiment	2662
MultiBaC	76
RadioGx	67
RIPAT	26
metabolomicsWorkbenchR	85
UMI4Cats	64
transomics2cytoscape	63
GWAS.BAYES	60
aggregateBioVar	75
AnVILBilling	54
CellaRepertorium	45
bambu	281
dasper	13
densvis	2419
ExperimentSubset	73
AlpsNMR	70
simpleSingleCell	0
brew	65
RColorBrewer	16
UTAR	0
facets	0
SplicingFactory	47
CNVgears	31
calib	0
base	1
grDevices	1
vasp	4
packFinder	64
PubScore	6
receptLoss	47
SingleCellSignalR	260
Dune	49
tidybulk	277
FRASER	117
TADCompare	84
MsCoreUtils	3739
SPsimSeq	184
scry	236
BiocDockerManager	13
idpr	69
BiocIO	19983
zellkonverter	1238
Rtpca	67
RegEnrich	107
scDataviz	82
Nebulosa	1091
rsemmed	48
GSgalgoR	53
ADImpute	75
MSEADbi	5
ISAnalytics	60
ChromSCape	67
NewWave	122
SpatialDecon	197
VERSO	51
BSgenome.Hsapiens.UCSC.hg19	7
magrittr	20
flowGraph	53
vcfR	1
stats	1
KEGG.db	1
graphat	1
datasets	1
grid	1
ribor	53
ribosomeProfilingQC	86
dittoSeq	1458
tscR	14
distinct	264
HIPPO	51
ROCpAI	48
glmGamPoi	4404
frenchFISH	45
spicyR	186
CoreGx	369
DegNorm	59
CSSQ	52
proActiv	69
MSstatsTMTPTM	5
MSstatsConvert	467
marr	56
MSPrep	161
NanoMethViz	87
ncRNAtools	54
biocthis	248
famat	62
megadepth	127
pageRank	57
dichromat	3
sendmailR	2
DEXICA	0
RLassoCox	60
PFP	11
exomePeak2	93
sarks	49
struct	154
pga	0
hicbricks	0
TAPseq	66
rrvgo	524
scHOT	67
GCSConnection	6
easyreporting	57
TreeAndLeaf	137
PloGO2	59
BRGenomics	131
flowCut	108
scClassify	79
MatrixGenerics	39945
SCOPE	67
CiteFuse	88
cmapR	405
scMAGeCK	8
SynExtend	59
optimalFlow	64
BrainSABER	10
ggtreeExtra	1050
Omixer	58
HPAStainR	11
pipeComp	59
preciseTAD	65
ResidualMatrix	3630
scCB2	59
SCFA	48
SeqGate	55
microbiomeExplorer	84
MOGAMUN	55
GCSFilesystem	7
AnVILPublish	63
BayesSpace	241
MethReg	68
MSstatsPTM	202
musicatk	87
VplotR	60
tidySummarizedExperiment	366
degraph	1
VarCon	49
GenomicDistributions	103
tools	1
utils	1
GO.db	15
Homo.sapiens	6
methods	1
string	1
clustifyr	148
netDx	47
EpiTxDb	84
snapcount	61
biobtreeR	53
EnMCB	63
NoRCE	55
reconsi	54
GeneTonic	315
sangeranalyseR	185
corral	81
HCAMatrixBrowser	3
CytoTree	15
ILoReg	47
MesKit	78
ToxicoGx	70
fmrs	124
periodicDNA	51
PhosR	116
Spectra	1932
customCMPdb	70
systemPipeShiny	67
moanin	175
labeling	160
GenomeInfoDbData	20
org.Hs.eg.db	15
ReactomeContentService4R	118
splines	1
stats4	1
geneLenDataBase	10
hgu133plus2.db	8
compiler	1
rstudio	1
NPARC	73
cindex	0
MEAT	52
ExploreModelMatrix	170
rSWeeP	54
scuttle	9816
LACE	163
gmoviz	57
OpenStats	50
cBioPortalData	436
timeOmics	86
infinityFlow	79
GWENA	238
GSEAmining	69
padma	58
snifter	137
POMA	132
recountmethylation	76
rnaEditr	62
Informeasure	44
lefser	570
cfDNAPro	75
velociraptor	135
TileDBArray	62
TimiRGeN	51
spatialHeatmap	213
censcyt	60
BSgenome.Hsapiens.UCSC.hg38	12
affio	0
graphics	1
GEOfastq	81
nempi	62
CAEN	48
basilisk	4228
pmp	118
ga4ghclient	0
randRotation	46
GPA	54
MOMA	60
regutools	80
CeTF	86
MicrobiotaProcess	526
iSEEu	114
getDEE2	53
bluster	5373
rebook	141
scp	175
scRepertoire	428
metabCombiner	73
MOFA2	487
Herper	148
msImpute	167
nearBynding	54
recount3	300
bitops	31
metapod	4889
shinyepico	71
PFAM.db	12
TxDb.Hsapiens.UCSC.hg19.knownGene	6
RiboDiPA	55
interacCircos	64
awst	54
autonomics	57
drugTargetInteractions	62
RCSL	47
HubPub	117
PhIPData	102
barcodetrackR	58
diffUTR	58
scAnnotatR	178
VAExprs	50
veloviz	52
svaRetro	62
OSCA.basic	19
csawBook	4
ichorCNA	0
coMethDMR	68
rprimer	78
ebimage	1
BOBaFIT	61
SOMNiBUS	61
lisaClust	139
mia	1517
POWSC	65
sechm	158
cosmosR	76
ReactomeGraph4R	49
Rbec	61
DelayedRandomArray	92
scShapes	48
systemPipeTools	61
cageminer	65
cliProfiler	53
imcRtools	226
deconvR	70
ODER	9
MicrobiomeProfiler	123
Cepo	199
genomicInstability	60
biodbLipidmaps	42
mosbi	50
rGenomeTracks	51
epistack	54
ggspavis	171
TargetDecoy	61
IlluminaHumanMethylation450kmanifest	6
mulcom	1
ggmanh	197
CNVMetrics	55
crisprBase	163
VGAM	16
ramr	49
m6Aboost	47
memes	212
MQmetrics	35
MsBackendMassbank	81
cyanoFilter	56
dir.expiry	3899
decoupleR	1059
miQC	111
hca	64
planet	199
GeomxTools	413
MungeSumstats	1080
XNAString	54
vissE	100
HGC	68
scanMiR	91
BioPlex	5
FindIT2	58
mitoClone2	77
pairkat	78
fobitools	62
DelayedTensor	53
pengls	44
biodbUniprot	53
MsBackendRawFileReader	66
GEOexplorer	65
GeoDiff	76
biodbKegg	71
synapsis	45
BentoBox	0
hermes	148
netZooR	65
GBScleanR	75
SCArray	86
Travel	4
KBoost	45
condiments	95
MSstatsLOBD	59
dce	71
wppi	44
cbpManager	56
PhenoGeneRanker	43
BloodGen3Module	155
treekoR	60
CytoGLMM	98
spatialDE	108
iPath	45
ProteoDisco	57
sparrow	208
scTreeViz	54
methylclock	153
NxtIRFcore	11
FLAMES	79
traviz	61
OSCA.advanced	16
OSCA	5
InteractiveComplexHeatmap	411
methylscaper	83
rawrr	216
MACSr	111
midasHLA	57
MsBackendMgf	448
DExMA	66
segmenter	68
Dino	60
conclus	7
CNViz	59
supersigs	99
mirTarRnaSeq	68
tricycle	242
epidecodeR	51
cellmigRation	51
transformGamPoi	79
enhancerHomologSearch	58
nullranges	181
epigraHMM	65
biodbHmdb	67
txcutr	51
MSstatsLiP	82
TrajectoryUtils	1960
OSCA.intro	54
OSCA.workflows	33
fedup	53
MatrixQCvis	171
NanoTube	84
CONSTANd	52
NanoStringNCTools	405
msqrob2	152
fgga	53
FEAST	117
scClassifR	4
geva	50
GenomicSuperSignature	67
Summix	50
spiky	48
quantiseqr	459
SingleMoleculeFootprinting	63
CelliD	243
multiSight	64
NeuCA	40
ORFhunteR	55
TrajectoryGeometry	45
HiCDCPlus	87
CIMICE	55
orthogene	333
BioNERO	308
ggmsa	526
spatzie	49
metapone	63
BUSseq	58
surfaltr	47
scanMiRApp	54
svaNUMT	63
CyTOFpower	54
scatterHatch	50
RiboCrypt	57
netOmics	33
RLSeq	31
sccomp	106
dStruct	51
benchdamic	85
KaryoploteR	0
BSgenome.Hsapiens.NCBI.GRCh38	1
clusterprofiler	1
MetaboCoreUtils	1757
immunotation	54
LRcell	52
MAGAR	167
miloR	297
MsFeatures	1697
mistyR	90
biodb	191
sitadela	52
satuRn	276
TraRe	7
airpart	68
atena	113
plotgardener	324
bugsigdbr	161
miaSim	88
scReClassify	64
easier	139
tripr	52
targetsearch	0
mfuzz	0
bayespeak	0
ScaledMatrix	12301
VaSP	62
IRISFGM	72
PDATK	136
InterCellar	76
miaViz	247
ptairMS	52
DeepPINCS	84
ppcseq	58
ComPrAn	56
tLOH	50
ModCon	47
epialleleR	62
SingleRBook	2
granulator	121
cytoKernel	65
tanggle	66
monaLisa	149
biodbChebi	88
Cogito	50
rmspc	65
CellBarcode	69
OSCA.multisample	19
HPiP	55
MAI	61
microbiomeMarker	397
csdR	49
BindingSiteFinder	63
TRESS	98
CompoundDb	266
mbOmic	9
MuData	62
PanomiR	71
BiocBaseUtils	6209
omada	47
scMET	51
ASURAT	66
globals	52
uwot	97
susieR	20
MASS	326
bookdown	37
evaluate	389
RedisParam	47
tidytree	46
single	45
phenomis	59
FuseSOM	55
gWidgets2tcltk	0
BiocManager	285
terra	40
plyr	147
samr	6
restfulr	9
Matrix	411
FDb.InfiniumMethylation.hg19	6
RcppAnnoy	40
waiter	12
rsconnect	40
memoise	16
htmltools	358
packrat	32
pkgload	302
formatters	5
webshot	30
bench	1
bpcp	1
hdrcde	6
colorRamps	11
IlluminaHumanMethylationEPICanno.ilm10b4.hg19	6
CBPS	1
Exact	1
MCMCglmm	1
MCMCpack	2
FlowSorted.CordBloodCombined.450k	10
org.Rn.eg.db	10
ccdata	10
lsa	8
coloc	20
JASPAR2020	7
devtools	34
webmockr	1
xaringanthemer	1
dittodb	0
fork	1
gamlss.dist	4
ggPMX	1
ipaddress	1
klaR	3
jsTreeR	1
interp	15
pins	21
pmtables	1
partitions	1
randtoolbox	1
paletteer	8
R.rsp	1
recipes	57
Rsmlx	1
reda	1
s2	47
sparklyr	12
spatialreg	1
spaMM	1
spam	6
RAthena	12
RPostgres	77
checkmate	216
leaps	5
geosphere	12
rpart	69
odbc	25
paws.security.identity	15
rematch2	2
enc	0
expm	19
extraTrees	0
rJava	104
subselect	1
superpc	1
paws.cost.management	15
SparseM	40
dtw	1
ggsignif	11
here	2
polysat	0
aplot	50
bayesplot	12
bigrquery	15
curatedMetagenomicData	0
xaringanExtra	1
future.apply	166
spatstat.utils	27
ipred	29
units	49
esquisse	5
collections	1
dotCall64	8
brms	1
gtable	188
lgr	2
network	2
riskRegression	1
pkgcache	10
Runuran	1
shinySelect	0
padr	1
visNetwork	4
Rsolnp	2
amgen.okta.client	1
kpmt	0
sticky	0
raster	22
abc.data	1
afex	1
AlgDesign	3
GSA	1
admixtools	0
easypar	0
ggforestplot	0
peakPick	0
signature.tools.lib	0
unbalanced	0
WGSmapp	1
proj4	18
bigassertr	1
reshape	3
findpython	12
purr	0
future.callr	4
doRNG	4
fracdiff	5
keyring	6
quarto	8
rvg	1
servr	6
npde	1
Markdown	0
MALDIquant	3
rj.gd	1
PMCMRplus	2
qgam	1
qrnn	1
RNeXML	1
SOAR	0
startupmsg	1
stabs	1
tclust	1
trust	0
tseriesChaos	0
xlsxjars	1
bayesm	9
BayesianTools	0
bedr	0
bigsnpr	0
Boruta	0
cgdsr	0
calibrate	1
chemometrics	1
clustree	2
CompQuadForm	1
correlation	4
diagram	1
diveRsity	0
EasyABC	0
elliptic	1
ergm.count	0
fdrtool	3
gclus	1
gamlss.data	2
gdistance	0
GillespieSSA	0
glmmML	1
GUTS	0
imagerExtra	0
intervals	6
jiebaR	0
labdsv	1
mboost	3
MIIVsem	0
mltools	0
np	0
operator.tools	1
pan	2
penalized	1
biodbNci	62
cytoMEM	98
DepInfeR	49
scales	123
hms	69
terraTCGAdata	66
RandomFieldsUtils	0
extraChIPs	85
katdetectr	68
knitr	302
goSorensen	65
proteasy	23
furrr	14
openssl	400
Voyager	159
magrene	53
regioneReloaded	59
HiContacts	106
SPIAT	120
epistasisGA	47
rtkore	1
sfsmisc	4
HandTill2001	1
gplots	118
zenith	141
ggtreeDendro	62
scBubbletree	57
nloptr	41
octad	61
simpleSeg	71
cardelino	66
perm	9
NADA	6
truncnorm	5
Rfast	17
fansi	241
bit	55
blob	75
formatR	32
plotly	130
tidyr	221
mice	14
ggpointdensity	7
blme	6
Illumina450ProbeVariants.db	1
readr	115
Cubist	1
isva	6
randomcoloR	6
agricolae	9
docopt	6
sparsesvd	18
Signac	14
cxAnalysis	0
Rcgmin	1
Rdpack	46
SuperLearner	1
asht	1
campsismod	1
deSolve	16
epiR	3
evd	3
forecast	10
lpSolveAPI	1
multcomp	100
precommit	1
pdftools	8
profile	0
prismatic	4
pointblank	1
rhub	3
rclipboard	7
roxygen2	160
sensitivity	1
tweenr	30
tracee	1
statmod	3
vaultr	1
RandomFields	0
RcppParallel	22
bit64	11
BMA	1
stringdist	21
xmlparsedata	1
mlbench	12
loo	16
r2d3	1
rcdk	11
plotmo	2
survMisc	2
yardstick	21
paws.storage	106
FNN	133
sp	93
desc	124
remotes	145
corpcor	2
sessioninfo	15
N2R	1
tidyjson	0
gsrc	0
ASExtras4	0
spatstat.geom	40
wk	50
tfruns	14
pkgconfig	3
shinyjs	6
rngtools	2
doBy	4
conquer	3
gridtext	3
h2o	4
languageserver	1
pkgdepends	11
memisc	1
pagedown	2
nonmemica	1
NMdata	1
smoothHR	0
dtwclust	1
ucminf	4
writexl	22
PKNCA	1
qcNvs	0
gsmoothr	6
R.devices	8
planttfhunter	72
htmlwidgets	195
codetools	67
clusterprofielr	0
highr	118
assertive.properties	10
polspline	4
bigmemory	2
biganalytics	0
msigdbr	5
GOplot	0
JADE	1
rrBLUP	1
clusthaplo	0
bezier	1
forestplot	1
acepack	2
semsim	0
org.Sc.sgd.db	1
AneuFinderData	0
BSgenome.Mmusculus.UCSC.mm9	0
gada	0
leafcutter	0
mobster	0
MutationTimeR	0
signature.tools.lib.v2.1	0
signature.tools.lib.back	0
ncdf4	12
BiasedUrn	14
pd.atdschip.tiling	0
bigreadr	0
npsurv	2
shape	52
circlize	43
huxtable	3
timechange	161
rngWELL	1
rxode2et	1
nlmixr2data	1
vcr	1
timereg	1
ks	7
mclogit	1
vapour	0
phylobase	1
PoissonSeq	0
rgexf	1
rentrez	1
RMTstat	0
rle	0
rlemon	1
RUnit	10
sampling	1
shinycssloaders	4
subplex	1
tensorA	11
TailRank	5
tsna	0
worrms	2
wikitaxa	1
WikipediR	3
BayesFactor	2
bridgesampling	1
sjPlot	1
flowworkspace	1
DiceDesign	12
DiscriMiner	0
expsmooth	0
fma	0
gamlss.tr	0
ggvis	1
gllvm	0
hypergeo	1
HWxtest	0
janeaustenr	4
Iso	1
interpretR	0
KODAMA	0
LaplacesDemon	1
logspline	1
medflex	0
mitml	1
ncbit	0
mvabund	1
oompaData	5
stringfish	7
COTAN	85
biodbNcbi	54
omicsViewer	53
biodbExpasy	53
cogeqc	71
GenomicInteractionNodes	51
protGear	58
RAREsim	46
rifi	50
RolDE	54
sSNAPPY	156
reticulate	78
gmp	17
posterior	13
callr	220
caret	26
gert	96
SpotClean	92
cluster	83
vctrs	280
spaSim	64
kernlab	18
ddalpha	1
libcoin	4
randomForest	4
BioNAR	70
WGCNA	13
shinyFiles	13
ps	292
data.table	301
dendextend	20
rsvd	9
GWASExactHW	6
shinyhelper	6
Rcpp	320
sass	288
png	44
farver	112
ALL	11
broom	104
openxlsx	51
brave	1
fds	6
IlluminaHumanMethylationEPICanno.ilm10b2.hg19	6
xgboost	103
Ckmeans.1d.dp	0
NeuralNetTools	1
org.Mm.eg.db	13
shinypanel	7
EnsDb.Hsapiens.v75	6
RcppTOML	18
ape	43
bdsmatrix	13
BBmisc	1
Brobdingnag	1
Bioconductor	1
dockerfiler	1
drake	9
workflows	14
emayili	2
gld	1
ggraph	27
ggdag	1
insight	17
mlr3	2
palmerpenguins	1
paws.compute	65
R.cache	2
qs	9
rvest	143
quantreg	73
sm	1
rticles	1
sf	43
ISwR	1
ModelMetrics	2
Rtsne	28
prettyunits	178
flexmix	2
foreign	62
km.ci	2
logistf	12
segmented	25
microbenchmark	1
optparse	46
pwr	1
rstan	16
rstanarm	1
shinythemes	2
emdbook	12
paws	15
HDInterval	12
config	28
rex	14
git2r	18
ivpack	0
distributional	16
dbscan	6
progressr	44
spatstat.sparse	24
pheatmap	1
dparser	1
mapbayr	0
flexclust	1
ggRandomForests	0
iml	1
RefManageR	1
templater	1
osqp	2
mrgmisc	1
Matching	3
minpack.lm	5
shadowtext	27
TxDb.Mmusculus.UCSC.mm10.knownGene	6
R.filesets	8
mutoss	9
scRNAseq	1
rms	4
expss	3
adegenet	1
graphql	1
dae	0
repr	4
adabag	1
akima	1
sommer	1
ctree	0
NoiseFiltersR	0
SNPlocs.Hsapiens.dbSNP151.GRCh38	0
tkrgl	0
TxDb.Hsapiens.UCSC.hg38.knownGene	1
ggstatsplot	3
bigparallelr	1
brglm	1
lsei	2
ica	3
tsne	2
BioCGenerics	0
bigD	1
cubelyr	0
gap	1
eha	1
modelenv	1
nlmixr2est	1
mrgvalprep	1
RcppDE	1
slickR	0
tidyvpc	1
RApiDatetime	1
pingr	10
maps	12
survivalROC	1
pd.hg.u133.plus.2	0
pd.mouse430.2	0
httptest	3
org.Ce.eg.db	1
proto	1
R.matlab	1
resample	0
shapefiles	1
signal	1
SignifReg	0
soundecology	0
topicmodels	1
tmle	2
base64	3
BDgraph	0
BeviMed	0
BCEE	0
bmp	1
mi	0
qualifier	1
phyclust	1
GenomeInfoDB	1
conditionz	1
compositions	2
cyclocomp	23
distrEx	0
DTRreg	0
extrafontdb	1
gap.datasets	1
GenSA	2
grpreg	1
influenceR	1
irace	0
kedd	0
Lmoments	1
locfdr	0
lqa	0
meta	1
MetaSKAT	0
networkDynamic	1
oddsratio	0
pbdZMQ	2
crisprScore	169
MetaboAnnotation	251
RCX	96
biodbMirbase	27
CBEA	121
patchwork	66
dtplyr	33
httr	151
tinytex	360
standR	127
RCurl	163
dplyr	229
purrr	130
consICA	159
updateObject	47
borealis	58
CircSeqAlignTk	58
demuxmix	244
factR	57
robustbase	31
gower	16
e1071	56
inum	4
modelr	36
ATACCoGAPS	49
signifinder	54
NetActivity	49
MSstatsShiny	109
TSP	17
generics	22
filelock	70
commonmark	208
admisc	14
RcppZiggurat	7
RcppHNSW	23
pRolocdata	10
shiny	285
renv	148
DBI	315
ggplot2	345
digest	388
iterators	7
processx	278
fontawesome	101
testthat	292
minqa	110
SeuratObject	40
aws.s3	6
IlluminaHumanMethylation450kanno.ilmn12.hg19	7
Lahman	1
ParamHelpers	0
mixsqp	21
egg	6
NMF	13
reldist	9
RWiener	1
aldvmm	1
C50	1
duckdb	3
cobalt	2
collapse	1
datawizard	12
clock	15
graphlayouts	48
ymlthis	0
fields	6
lbfgs	1
nleqslv	2
RApiSerialize	8
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readxl	73
saemix	1
rgl	3
rstpm2	1
tune	16
tidygraph	35
TMB	35
tidyposterior	1
RcppProgress	1
spatial	36
nnet	54
lintr	96
mclust	16
pander	3
party	57
styler	67
pryr	13
pscl	2
promises	233
fastmap	171
RcppEigen	159
utf8	221
dimRed	1
snow	11
igraph	170
locfit	85
ragg	215
ggfun	59
gargle	53
Matrix.utils	1
scam	1
nanostringr	1
fixest	1
bayestestR	9
gsDesign	1
mlr	1
JuliaCall	0
scatterplot3d	17
webfakes	1
vegan	13
cachem	253
lixoftConnectors.2	0
aroma.core	9
hgug4112a.db	0
SBGNview.data	1
ash	6
ellipsis	14
modeltools	1
apcluster	1
SingleCelLExperiment	0
spatstat.core	14
babelgene	6
gaston	1
speckle	183
superheat	0
ggExtra	5
castor	2
XVectorb	0
crrri	0
ABSOLUTE	0
flowWorkspaceData	1
kegggraph	0
CollessLike	0
NNLM	1
pctGCdata	0
SPACox	0
sROC	0
TCGAbiolinksGUI.data	1
conflicted	14
fitdistrplus	23
StanHeaders	18
DEoptimR	25
DEoptim	1
msm	6
jpeg	15
juicyjuice	1
gamlss	3
GPArotation	13
nanotime	1
rmutil	1
log4r	5
XLConnect	1
nlmixr2lib	1
ggbeeswarm	4
NMcalc	1
rj	1
org.Bt.eg.db	1
org.Gg.eg.db	1
org.Cf.eg.db	1
org.Dr.eg.db	1
datapipeline	1
RcppRoll	4
rda	0
sem	0
SimSeq	0
stopwords	1
uroot	0
audio	1
BB	1
bartMachine	1
BayesPen	0
biom	0
bridgedist	0
ComICS	0
contfrac	1
deal	0
DiagrammeR	3
distillery	0
dummies	0
fossil	0
GPfit	1
heatmap3	0
ineq	0
IDPmisc	3
lda	1
longmemo	0
magick	15
mediation	1
NLP	1
Palimpsest	0
pastecs	1
pbivnorm	1
phytools	6
multidplyr	0
comapr	61
MBECS	75
qmtools	56
pareg	55
fastreeR	77
rgoslin	82
PSMatch	999
nnSVG	122
crisprDesign	142
viridisLite	83
DT	198
sctransform	18
scDDboost	54
CTSV	61
xfun	411
GenomAutomorphism	43
GRaNIE	135
TREG	49
cli	315
crayon	137
lifecycle	213
TEKRABber	154
SpliceWiz	104
crisprViz	122
EasyCellType	64
iSEEhex	146
TENxIO	55
gemma.R	67
MetaPhOR	65
DRR	1
glmnet	23
DNAfusion	54
cpp11	193
viridis	194
venn	10
zCompositions	9
dqrng	54
shinydashboardPlus	14
shinyBS	9
yaml	224
lubridate	96
sys	111
isoband	45
glue	163
future	185
latticeExtra	10
car	30
maptools	20
metap	11
rainbow	10
MatchIt	4
EnsDb.Hsapiens.v86	8
qlcMatrix	16
PRROC	6
GenABEL	2
arm	4
bbmle	13
deseq	0
datamods	10
cmdstanr	1
cem	1
broom.helpers	10
clinPK	0
flexdashboard	2
Epi	3
xaringan	1
nhanesA	0
plumber	19
paws.common	110
pkgdown	102
RMariaDB	18
systemfit	1
spData	11
tarchetypes	6
targets	9
tidymodels	16
timeDate	38
RJSONIO	16
SDMTools	1
seqminer	12
sandwich	11
inline	1
class	44
AER	1
Formula	16
mda	1
sn	14
exactRankTests	2
trimcluster	0
umap	13
paws.application.integration	15
paws.networking	15
colourpicker	9
deldir	49
lpSolve	15
usethis	154
whisker	45
geoR	1
splancs	10
gmodels	2
glmnetUtils	11
officer	27
spatstat.random	39
sccore	1
leiden	24
biostatUtil	0
kohonen	1
Rd2roxygen	0
chron	4
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ada	1
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TNO	1
DoEstRare	0
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singleR	0
anRichment	0
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ICSNP	1
liana	1
r	1
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egor	1
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treeclimbR	21
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PIUMA	20
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tpSVG	20
UPDhmm	18
ClustAll	27
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ips	2
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hgu133plus2cdf	1
RcppEnsmallen	1
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StatCharrms	1
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smoothclust	26
PatientProfiles	1
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PepSetTest	3
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Unicode	1
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rlistings	2
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Johnson	1
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rayimage	1
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probably	1
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BE	1
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VisiumIO	22
SurfR	20
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DataExplorer	1
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Rcapture	1
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ensurer	1
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scJonas	1
poilog	1
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PubChemR	1
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omopgenerics	1
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ReporteRs	1
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SAVER	1
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MKmisc	1
ASMap	1
SCENIC	1
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forestmodel	1
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PROscorerTools	1
zli	1
txdbmaker	1237
gypsum	983
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pwalign	1822
smartid	32
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dinoR	19
HicAggR	18
SpotSweeper	19
epiregulon	23
ginmappeR	22
dar	22
motifTestR	32
mobileRNA	22
sketchR	34
bettr	20
MIRit	34
ggseqalign	4
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tidyCoverage	22
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PRISMselector	1
scDotPlot	4
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LMI	1
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feasts	3
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MendelianRandomization	3
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roak	1
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argusDS.S3	1
squallms	3
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emoa	1
teal.builder.modules	1
httptest2	1
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mlmm	1
VAM	1
CleanUpRNAseq	2
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Synth	1
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date	1
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simresults	1
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genetics	1
signac	1
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emstreeR	1
misty	1
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PKPDdatasets	1
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ClustOfVar	1
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DecisionCurve	1
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matrix	1
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rattle	1
nls2	1
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BiocFileCaches	1
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rbioinfcookbook	1
sleuth	1
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synbreed	1
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GAMBoost	1
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simr	1
ResourceSelection	1
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TCGAplot	1
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SCopeLoomR	1
NetCoMi	1
RefFreeEWAS	1
poibin	1
TCCGUI	1
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RProtoBuf	1
assertive.data.us	1
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MAPFX	24
teal.slice	2
scMultiSim	19
spoon	21
DegCre	20
multistateQTL	17
findIPs	24
NanoStringNorm	1
DynTxRegime	1
hdxmsqc	8
gINTomics	13
tidySpatialExperiment	28
oncomarkerbase	1
tsoutliers	1
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Ecume	1
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SimInf	1
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BioBase	1
S4vectors	1
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BioGA	2
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RNAseqQC	1
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MeTPeak	1
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topr	2
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Rcmdr	1
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vimp	1
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ReporteRsjars	1
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MicrobiomeAnalystR	1
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zingeR	1
annotationhub	1
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BIEN	1
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set	1
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b64	1
rlaR	1
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argusDS.studio.model.utils	1
sctrnasform	1
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assertive.data.uk	1
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teal.data	2
rawDiag	24
NCmisc	1
tidyomics	33
broadSeq	4
tester	1
argparser	1
aricode	1
AnVILGCP	3
DeepTarget	4
tabulizerjars	1
hugene10sttranscriptcluster.db	2
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reader	1
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epuRate	1
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EMVS	1
RISCA	1
iatlasGraphQLClient	1
powsimR	1
l2p	1
IPCAPS	1
trendeval	1
rdrop2	1
ore	1
BiodiversityR	1
argusDS.gamboostLSS	1
Rlabkey	1
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presser	1
hdf5	1
gageData	1
ITALICSData	1
tiledb	1
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mixture	1
VariantWarehouseBMS	1
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ACTIONet	1
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dep	1
frictionless	1
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OptiLCMS	1
rusinglecell	1
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V.PhyloMaker2	1
NORMT3	1
RNAmodR.Data	1
ptw	1
regress	1
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mycor	1
rCharts	1
DARAtools	1
loupeR	1
AsgntDAMacro	1
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cutoff	1
box.linters	1
WA43966.shareR.3043877	1
r-library-rags-stash	1
coRanking	1
rvertnet	1
MGnifyR	26
Rfast2	1
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valr	1
simPIC	19
HybridExpress	35
faers	30
DeProViR	23
SingleCellAlleleExperiment	36
scMitoMut	19
Pedixplorer	19
Damsel	11
WorldFlora	1
tabulizer	1
primeviewcdf	2
PwrGSD	1
adehabitat	1
readJDX	1
ROSE	1
tsibble	1
SeuratData	1
aads.rnai	1
frailtypack	3
grates	1
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ProgMan	1
neo2R	1
tidyFlowCore	5
berryFunctions	1
QuantPsyc	1
dismo	1
TimeProjection	1
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refinr	1
rgnparser	1
wallace	1
connectapi	1
od	1
maditr	1
iCiteR	1
job	1
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iSEEtree	4
kmcut	2
coverageview	1
SCtools	1
mvpart	1
BoomSpikeSlab	1
JBrowseR	1
altair	1
choroplethr	1
mosaicData	1
IlluminaHumanMethylationEPICv2manifest	1
merge	1
liger	2
MBESS	1
ecospat	1
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PupillometryR	1
tuneRanger	1
assertive.sets	1
svMisc	1
godmode	1
schoolmath	1
paquet	1
nlmeODE	1
OlinkAnalyze	1
unix	1
text2vec	1
teal.goshawk	1
ufs	1
spatsurv	1
envalysis	1
dslabs	1
tidydr	1
Biostring	1
parcats	1
Turnover.cells.pSILAC.TMT	1
velocyto.R	1
gausscov	1
R2GUESS	1
rayrender	1
DECENT	1
spdata	1
cvTools	1
precrec	1
DDRTree	1
ftExtra	1
hgu95av2cdf	1
ROCit	1
aigoraFitMini	1
taskscheduleR	1
eq5d	1
excelR	1
chAMP	1
XIFF	1
rsatscan	1
tmcn	1
ComplexUpset	1
genomicRanges	1