ENCODE Project at NHGRI Guidelines for Experiments

Current Guidelines:

ChIP-seq, ChIP-chip, DNase-seq, FAIRE-seq and DNAme Standards v2.0 (July 2011)

RNA Standards v1.0 (May 2011)

Previous Versions of Guidelines:

Cell Culture Guidelines

Chromatin and Transcription Factor Data Standards v1.0 (April 2010)

ChIP-seq Standards v1.0 ( Nov 2008)

DNase-seq and FAIRE-seq Standards (Jan 2009)

Standards for Data Reporting (Jan 2009)

Standards for Characterizing Histone Modification Antibodies (Nov 2008)

RNA-seq Best Practices (2009)

Updated October 26th, 2011