## ----setup, include=FALSE----------------------------------------------------- knitr::opts_chunk$set( warning = FALSE, message = FALSE, fig.width = 7.252, fig.height = 4, comment = "#>", fig.retina = 3 ) ## ----------------------------------------------------------------------------- library(logitr) library(dplyr) library(tidyr) library(kableExtra) # For tables numDraws <- unique(runtimes$numDraws) logitr_time <- runtimes %>% filter(package == "logitr") %>% rename(time_logitr = time_sec) time_compare <- runtimes %>% left_join(select(logitr_time, -package), by = "numDraws") %>% mutate(mult = round(time_sec/ time_logitr, 1)) %>% select(-time_logitr) # Compare raw times time_compare %>% select(-mult) %>% pivot_wider(names_from = numDraws, values_from = time_sec) %>% kbl() # Compare how many times slower compared to logitr time_compare %>% select(-time_sec) %>% pivot_wider(names_from = numDraws, values_from = mult) %>% kbl() ## ----eval=FALSE--------------------------------------------------------------- # library(ggplot2) # library(ggrepel) # # plotColors <- c("black", RColorBrewer::brewer.pal(n = 5, name = "Set1"), "gold") # benchmark <- runtimes %>% # ggplot(aes(x = numDraws, y = time_sec, color = package)) + # geom_line() + # geom_point() + # geom_text_repel( # data = . %>% filter(numDraws == max(numDraws)), # aes(label = package), # hjust = 0, nudge_x = 40, direction = "y", # size = 4.5, segment.size = 0 # ) + # scale_x_continuous( # limits = c(0, 1200), # breaks = numDraws, # labels = scales::comma) + # scale_y_continuous(limits = c(0, 300), breaks = seq(0, 300, 100)) + # scale_color_manual(values = plotColors) + # guides( # point = guide_legend(override.aes = list(label = "")), # color = guide_legend(override.aes = list(label = ""))) + # theme_bw(base_size = 18) + # theme( # panel.grid.minor = element_blank(), # panel.grid.major.x = element_blank(), # legend.position = "none", # axis.line.x = element_blank(), # axis.ticks.x = element_blank() # ) + # labs( # x = "Number of random draws", # y = "Computation time (seconds)" # ) # # benchmark ## ----eval=FALSE, echo=FALSE--------------------------------------------------- # ggsave('benchmark.png', benchmark, width = 8.5, height = 6) ## ----probabilities, echo=FALSE------------------------------------------------ knitr::include_graphics('benchmark.png')