Last updated on 2025-12-16 10:49:44 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 38.89 | 764.75 | 803.64 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 24.09 | 504.10 | 528.19 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 69.00 | 1313.21 | 1382.21 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 66.00 | 1250.56 | 1316.56 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 38.00 | 554.00 | 592.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 54.55 | 699.28 | 753.83 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 36.47 | 698.05 | 734.52 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 37.00 | 525.00 | 562.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 118.00 | 126.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 25.00 | 528.00 | 553.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 54.00 | 642.00 | 696.00 | ERROR |
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [103s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-16 20:17:36.315341: Isomap START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.315603: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.319126: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.325599: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 20:17:36.336197: Isomap START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.336314: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.338878: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.344955: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 20:17:36.351401: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.351554: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.356059: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.371654: embedding
> test_pipeop_isomap.R: 2025-12-16 20:17:36.372153: DONE
> test_pipeop_isomap.R: 2025-12-16 20:17:36.384918: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.385176: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.390127: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.405797: embedding
> test_pipeop_isomap.R: 2025-12-16 20:17:36.406371: DONE
> test_pipeop_isomap.R: 2025-12-16 20:17:36.428101: Isomap START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.428247: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.432638: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.466565: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 20:17:36.474989: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.475215: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.688941: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.771059: embedding
> test_pipeop_isomap.R: 2025-12-16 20:17:36.772085: DONE
> test_pipeop_isomap.R: 2025-12-16 20:17:36.803017: Isomap START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.803166: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.805374: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.811641: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 20:17:36.818814: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.818998: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.823522: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.838918: embedding
> test_pipeop_isomap.R: 2025-12-16 20:17:36.839367: DONE
> test_pipeop_isomap.R: 2025-12-16 20:17:36.871363: Isomap START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.871547: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.873988: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.880333: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 20:17:36.890847: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.891023: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.895615: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.911419: embedding
> test_pipeop_isomap.R: 2025-12-16 20:17:36.911801: DONE
> test_pipeop_isomap.R: 2025-12-16 20:17:36.928186: Isomap START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.928341: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.930522: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.936713: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 20:17:36.947459: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.94766: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.956817: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.972526: embedding
> test_pipeop_isomap.R: 2025-12-16 20:17:36.972895: DONE
> test_pipeop_isomap.R: 2025-12-16 20:17:36.989452: Isomap START
> test_pipeop_isomap.R: 2025-12-16 20:17:36.989566: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:36.99197: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:36.998261: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 20:17:37.00874: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 20:17:37.008917: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:37.013892: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:37.029371: embedding
> test_pipeop_isomap.R: 2025-12-16 20:17:37.02984: DONE
> test_pipeop_isomap.R: 2025-12-16 20:17:37.046786: Isomap START
> test_pipeop_isomap.R: 2025-12-16 20:17:37.046917: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:37.049183: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:37.055381: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 20:17:37.065495: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 20:17:37.065658: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:37.070135: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:37.085522: embedding
> test_pipeop_isomap.R: 2025-12-16 20:17:37.085956: DONE
> test_pipeop_isomap.R: 2025-12-16 20:17:37.104187: Isomap START
> test_pipeop_isomap.R: 2025-12-16 20:17:37.10432: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:37.106625: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:37.11303: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 20:17:37.130702: Isomap START
> test_pipeop_isomap.R: 2025-12-16 20:17:37.130841: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:37.13301: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:37.138947: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 20:17:37.144263: Isomap START
> test_pipeop_isomap.R: 2025-12-16 20:17:37.144393: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 20:17:37.152046: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 20:17:37.158364: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [298s/258s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-16 02:53:50.725563: Isomap START
> test_pipeop_isomap.R: 2025-12-16 02:53:50.726106: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:50.748161: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:50.769357: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 02:53:50.843681: Isomap START
> test_pipeop_isomap.R: 2025-12-16 02:53:50.843991: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:50.850921: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:50.884793: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 02:53:50.916665: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 02:53:50.917165: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:50.932737: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:51.031946: embedding
> test_pipeop_isomap.R: 2025-12-16 02:53:51.033198: DONE
> test_pipeop_isomap.R: 2025-12-16 02:53:51.073632: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 02:53:51.073936: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:51.099458: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:51.17198: embedding
> test_pipeop_isomap.R: 2025-12-16 02:53:51.173026: DONE
> test_pipeop_isomap.R: 2025-12-16 02:53:51.296126: Isomap START
> test_pipeop_isomap.R: 2025-12-16 02:53:51.296397: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:51.316356: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:51.493466: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 02:53:51.535311: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 02:53:51.535717: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:51.586179: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:51.957118: embedding
> test_pipeop_isomap.R: 2025-12-16 02:53:51.968911: DONE
> test_pipeop_isomap.R: 2025-12-16 02:53:52.171232: Isomap START
> test_pipeop_isomap.R: 2025-12-16 02:53:52.17246: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:52.178924: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:52.244446: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 02:53:52.301835: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 02:53:52.303202: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:52.346372: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:52.424422: embedding
> test_pipeop_isomap.R: 2025-12-16 02:53:52.425654: DONE
> test_pipeop_isomap.R: 2025-12-16 02:53:52.612205: Isomap START
> test_pipeop_isomap.R: 2025-12-16 02:53:52.612485: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:52.618829: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:52.682493: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 02:53:52.735325: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 02:53:52.73576: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:52.756925: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:52.834029: embedding
> test_pipeop_isomap.R: 2025-12-16 02:53:52.835093: DONE
> test_pipeop_isomap.R: 2025-12-16 02:53:52.926719: Isomap START
> test_pipeop_isomap.R: 2025-12-16 02:53:52.928613: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:52.942558: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:52.976057: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 02:53:53.050273: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 02:53:53.050692: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:53.089478: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:53.156093: embedding
> test_pipeop_isomap.R: 2025-12-16 02:53:53.15714: DONE
> test_pipeop_isomap.R: 2025-12-16 02:53:53.249113: Isomap START
> test_pipeop_isomap.R: 2025-12-16 02:53:53.249416: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:53.263808: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:53.291483: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 02:53:53.387976: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 02:53:53.388424: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:53.410841: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:53.510903: embedding
> test_pipeop_isomap.R: 2025-12-16 02:53:53.512121: DONE
> test_pipeop_isomap.R: 2025-12-16 02:53:53.615139: Isomap START
> test_pipeop_isomap.R: 2025-12-16 02:53:53.615784: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:53.622815: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:53.652806: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 02:53:53.726321: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-16 02:53:53.727805: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:53.758316: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:53.851109: embedding
> test_pipeop_isomap.R: 2025-12-16 02:53:53.852497: DONE
> test_pipeop_isomap.R: 2025-12-16 02:53:53.963997: Isomap START
> test_pipeop_isomap.R: 2025-12-16 02:53:53.964296: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:53.983525: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:54.023894: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 02:53:54.116117: Isomap START
> test_pipeop_isomap.R: 2025-12-16 02:53:54.116913: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:54.131144: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:54.175375: Classical Scaling
> test_pipeop_isomap.R: 2025-12-16 02:53:54.210624: Isomap START
> test_pipeop_isomap.R: 2025-12-16 02:53:54.210944: constructing knn graph
> test_pipeop_isomap.R: 2025-12-16 02:53:54.22577: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-16 02:53:54.261249: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [270s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-12-12 19:20:25.870782: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:25.87195: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:25.887949: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:25.912321: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:25.974434: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:25.975244: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:25.986304: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.007274: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:26.049057: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:26.050026: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:26.071395: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.113423: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:26.11517: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:26.148747: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:26.149405: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:26.188813: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.240473: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:26.242336: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:26.340739: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:26.341192: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:26.357552: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.442076: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:26.47549: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:26.476157: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:26.523032: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.757585: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:26.762056: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:26.940653: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:26.941359: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:26.952443: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:26.976071: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:27.032392: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.033331: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.052443: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.099888: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:27.101545: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:27.298994: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.299604: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.308668: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.325218: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:27.372726: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.373643: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.468466: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.518838: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:27.520794: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:27.63686: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.637492: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.648632: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.665086: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:27.725201: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.726059: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.747256: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.79538: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:27.79725: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:27.898375: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:27.898864: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:27.91084: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:27.948593: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:28.027047: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.028026: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.046903: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.09513: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:28.096837: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:28.205505: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.206151: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.216088: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.237871: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:28.301304: L-Isomap embed START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.301932: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.315374: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.35887: embedding
> test_pipeop_isomap.R: 2025-12-12 19:20:28.360566: DONE
> test_pipeop_isomap.R: 2025-12-12 19:20:28.50801: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.50853: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.518106: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.540897: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:28.651146: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.651824: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.661601: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.683349: Classical Scaling
> test_pipeop_isomap.R: 2025-12-12 19:20:28.715768: Isomap START
> test_pipeop_isomap.R: 2025-12-12 19:20:28.716413: constructing knn graph
> test_pipeop_isomap.R: 2025-12-12 19:20:28.72631: calculating geodesic distances
> test_pipeop_isomap.R: 2025-12-12 19:20:28.748001: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scalerange.R:7:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.3961464')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64