Package: smoppix
Type: Package
Title: Analyze Single Molecule Spatial Transcriptomics and Other
        Spatial Omics Data Using the Probabilistic Index
Version: 0.99.3
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: Test for univariate and multivariate spatial patterns in 
    spatial omics data with single-molecule resolution. The tests implemented 
    allow for analysis of nested designs and are automatically calibrated to different
    biological specimens. Tests for aggregation, colocalization, gradients and vicinity to cell edge or centroid are provided.
License: GPL-2
Encoding: UTF-8
Imports: spatstat.geom(>= 3.2.0),spatstat.random,
        methods,BiocParallel,SummarizedExperiment,SpatialExperiment,scam,Rdpack,stats,utils,extraDistr,lmerTest,lme4,ggplot2,graphics,grDevices,Rcpp
        (>= 1.0.11),Matrix,spatstat.model,openxlsx
Suggests:
        testthat,rmarkdown,knitr,DropletUtils,polyCub,RImageJROI,sp,ape
RdMacros: Rdpack
RoxygenNote: 7.3.1
biocViews: Transcriptomics, Spatial, SingleCell
Depends: R (>= 4.3.0)
VignetteBuilder: knitr
BugReports: https://github.com/sthawinke/smoppix
URL: https://github.com/sthawinke/smoppix
LinkingTo: Rcpp
NeedsCompilation: yes
Packaged: 2024-04-11 11:52:12 UTC; pkgbuild
Author: Stijn Hawinkel [cre, aut] (<https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>
