--- title: "restfulSEData -- SummarizedExperiment shells for remote assay data" author: "Vincent J. Carey, stvjc at channing.harvard.edu, Shweta Gopaulakrishnan reshg at channing.harvard.edu" date: "`r format(Sys.time(), '%B %d, %Y')`" vignette: > %\VignetteEngine{knitr::rmarkdown} %\VignetteIndexEntry{restfulSEData -- SummarizedExperiment shells for remote assay data} %\VignetteEncoding{UTF-8} output: BiocStyle::pdf_document: toc: yes number_sections: yes BiocStyle::html_document: highlight: pygments number_sections: yes theme: united toc: yes --- # Introduction This package includes SummarizedExperiment or RangedSummarizedExperiment instances from which assay data has been removed, so that it can be restored in real time from remote stores. - The example given below elaborates on how to access the data from the standard ExperimentHub interface : ```{r get-data} library(ExperimentHub) ehub = ExperimentHub() myfiles <- query(ehub , "restfulSEData") myfiles myfiles[[1]] myfiles[["EH551"]] #load by EH id ``` - To get a flavor of the datasets present : ```{r meta} dataResource() ``` - To use the data with "restfulSE" R package : We grab the ExperimentHub ID of the dataset we are interested in. ```{use data} myfiles[["EH551"]] -> banoSEMeta banoSEMeta ```