utils::sessionInfo()
## R version 4.5.1 Patched (2025-08-23 r88802)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.3 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.22-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] EpiCompare_1.14.0 BiocStyle_2.38.0
##
## loaded via a namespace (and not attached):
## [1] splines_4.5.1
## [2] BiocIO_1.20.0
## [3] bitops_1.0-9
## [4] ggplotify_0.1.3
## [5] filelock_1.0.3
## [6] tibble_3.3.0
## [7] R.oo_1.27.1
## [8] XML_3.99-0.19
## [9] lifecycle_1.0.4
## [10] httr2_1.2.1
## [11] lattice_0.22-7
## [12] magrittr_2.0.4
## [13] plotly_4.11.0
## [14] sass_0.4.10
## [15] rmarkdown_2.30
## [16] jquerylib_0.1.4
## [17] yaml_2.3.10
## [18] plotrix_3.8-4
## [19] ggtangle_0.0.7
## [20] cowplot_1.2.0
## [21] DBI_1.2.3
## [22] RColorBrewer_1.1-3
## [23] lubridate_1.9.4
## [24] abind_1.4-8
## [25] GenomicRanges_1.62.0
## [26] purrr_1.1.0
## [27] R.utils_2.13.0
## [28] BiocGenerics_0.56.0
## [29] RCurl_1.98-1.17
## [30] yulab.utils_0.2.1
## [31] rappdirs_0.3.3
## [32] gdtools_0.4.4
## [33] IRanges_2.44.0
## [34] S4Vectors_0.48.0
## [35] enrichplot_1.30.0
## [36] ggrepel_0.9.6
## [37] tidytree_0.4.6
## [38] ChIPseeker_1.46.0
## [39] codetools_0.2-20
## [40] DelayedArray_0.36.0
## [41] DOSE_4.4.0
## [42] tidyselect_1.2.1
## [43] aplot_0.2.9
## [44] UCSC.utils_1.6.0
## [45] farver_2.1.2
## [46] base64enc_0.1-3
## [47] matrixStats_1.5.0
## [48] stats4_4.5.1
## [49] BiocFileCache_3.0.0
## [50] Seqinfo_1.0.0
## [51] GenomicAlignments_1.46.0
## [52] jsonlite_2.0.0
## [53] systemfonts_1.3.1
## [54] tools_4.5.1
## [55] treeio_1.34.0
## [56] TxDb.Hsapiens.UCSC.hg19.knownGene_3.22.1
## [57] Rcpp_1.1.0
## [58] glue_1.8.0
## [59] SparseArray_1.10.0
## [60] xfun_0.53
## [61] qvalue_2.42.0
## [62] MatrixGenerics_1.22.0
## [63] GenomeInfoDb_1.46.0
## [64] dplyr_1.1.4
## [65] withr_3.0.2
## [66] BiocManager_1.30.26
## [67] fastmap_1.2.0
## [68] boot_1.3-32
## [69] caTools_1.18.3
## [70] digest_0.6.37
## [71] timechange_0.3.0
## [72] R6_2.6.1
## [73] mime_0.13
## [74] gridGraphics_0.5-1
## [75] seqPattern_1.42.0
## [76] GO.db_3.22.0
## [77] gtools_3.9.5
## [78] dichromat_2.0-0.1
## [79] RSQLite_2.4.3
## [80] cigarillo_1.0.0
## [81] R.methodsS3_1.8.2
## [82] tidyr_1.3.1
## [83] generics_0.1.4
## [84] fontLiberation_0.1.0
## [85] data.table_1.17.8
## [86] rtracklayer_1.70.0
## [87] bsplus_0.1.5
## [88] httr_1.4.7
## [89] htmlwidgets_1.6.4
## [90] S4Arrays_1.10.0
## [91] downloadthis_0.5.0
## [92] pkgconfig_2.0.3
## [93] gtable_0.3.6
## [94] blob_1.2.4
## [95] S7_0.2.0
## [96] impute_1.84.0
## [97] XVector_0.50.0
## [98] htmltools_0.5.8.1
## [99] fontBitstreamVera_0.1.1
## [100] bookdown_0.45
## [101] fgsea_1.36.0
## [102] scales_1.4.0
## [103] Biobase_2.70.0
## [104] png_0.1-8
## [105] ggfun_0.2.0
## [106] knitr_1.50
## [107] tzdb_0.5.0
## [108] reshape2_1.4.4
## [109] rjson_0.2.23
## [110] nlme_3.1-168
## [111] curl_7.0.0
## [112] cachem_1.1.0
## [113] stringr_1.5.2
## [114] BiocVersion_3.22.0
## [115] KernSmooth_2.23-26
## [116] parallel_4.5.1
## [117] AnnotationDbi_1.72.0
## [118] restfulr_0.0.16
## [119] pillar_1.11.1
## [120] grid_4.5.1
## [121] vctrs_0.6.5
## [122] gplots_3.2.0
## [123] dbplyr_2.5.1
## [124] evaluate_1.0.5
## [125] magick_2.9.0
## [126] tinytex_0.57
## [127] readr_2.1.5
## [128] GenomicFeatures_1.62.0
## [129] cli_3.6.5
## [130] compiler_4.5.1
## [131] Rsamtools_2.26.0
## [132] rlang_1.1.6
## [133] crayon_1.5.3
## [134] labeling_0.4.3
## [135] plyr_1.8.9
## [136] fs_1.6.6
## [137] ggiraph_0.9.2
## [138] stringi_1.8.7
## [139] genomation_1.42.0
## [140] viridisLite_0.4.2
## [141] gridBase_0.4-7
## [142] BiocParallel_1.44.0
## [143] Biostrings_2.78.0
## [144] lazyeval_0.2.2
## [145] GOSemSim_2.36.0
## [146] fontquiver_0.2.1
## [147] Matrix_1.7-4
## [148] BSgenome_1.78.0
## [149] hms_1.1.4
## [150] patchwork_1.3.2
## [151] bit64_4.6.0-1
## [152] ggplot2_4.0.0
## [153] KEGGREST_1.50.0
## [154] SummarizedExperiment_1.40.0
## [155] AnnotationHub_4.0.0
## [156] igraph_2.2.1
## [157] memoise_2.0.1
## [158] bslib_0.9.0
## [159] ggtree_4.0.0
## [160] fastmatch_1.1-6
## [161] bit_4.6.0
## [162] ape_5.8-1