Changes in version 0.99.16                       

  - Added utils to DESCRIPTION

                       Changes in version 0.99.15                       

  - Updated to use R 4.4.0

  - Added importFrom for grDevices and utils

  - Fixed typos in help files

                       Changes in version 0.99.14                       

BUG FIXES

  - Added imported packages to DESCRIPTION

                       Changes in version 0.99.13                       

  - Numerous code style changes made to comply with Bioconductor
    standards.

  - Updated to run require R 4.3.3

  - Vignette style changed to Bioconductor

  - Selective imports implemented

                       Changes in version 0.99.12                       

BUG FIXES

  - Fixed one more bad href in help files.

                       Changes in version 0.99.11                       

BUG FIXES

  - Fixed bad hrefs in help files.

                       Changes in version 0.99.10                       

BUG FIXES

  - Fixed example for runDegCre.

                       Changes in version 0.99.9                        

BUG FIXES

  - Fixed test functions to subset GRanges.

                       Changes in version 0.99.8                        

BUG FIXES

  - Fixed runnable examples to load GenomicRanges.

                       Changes in version 0.99.7                        

BUG FIXES

  - Changed test functions to run on chr1 only for efficiency.

                       Changes in version 0.99.6                        

BUG FIXES

  - Changed examples to run on chr1 for computational efficiency.

                       Changes in version 0.99.4                        

BUG FIXES

  - Fixed F to FALSE in example

                       Changes in version 0.99.3                        

BUG FIXES

  - Set all non-exported functions to not run examples.
  - Fixed vignette code.

NEW FEATURES

  - getAssocDistHits is now exported.

                       Changes in version 0.99.2                        

BUG FIXES

  - Fixed calcAUC.Rd to not run example.

                       Changes in version 0.99.1                        

BUG FIXES

  - Fixed calcBinomFDRperBin to give FDR = 1 for 0 assocProbs in top 10
    CRE p-values.

                       Changes in version 0.99.0                        

BUG FIXES

  - Added missing unit test for optimizeAlphaDegCre

                        Changes in version 0.3.0                        

NEW FEATURES

  - Added unit tests for most functions.

BUG FIXES

  - Fixed row names in plotDegCreAssocProbVsDist
  - Changed left margin handling and arched plot color bar placement in
    plotBrowserDegCre
  - Added internal keyword to un-exported functions.

                        Changes in version 0.2.0                        

NEW FEATURES

  - Added a NEWS file to track changes.
  - Made numerous style changes to code in preparation for Bioconductor
    submission.