computeDevianceResiduals	computeDevianceResiduals
computeObservationalWeights	computeObservationalWeights
getAlpha_mu	getAlpha_mu
getAlpha_mu,ZinbModel-method	ZinbModel-class
getAlpha_pi	getAlpha_pi
getAlpha_pi,ZinbModel-method	ZinbModel-class
getBeta_mu	getBeta_mu
getBeta_mu,ZinbModel-method	ZinbModel-class
getBeta_pi	getBeta_pi
getBeta_pi,ZinbModel-method	ZinbModel-class
getEpsilon_alpha	getEpsilon_alpha
getEpsilon_alpha,ZinbModel-method	ZinbModel-class
getEpsilon_beta_mu	getEpsilon_beta_mu
getEpsilon_beta_mu,ZinbModel-method	ZinbModel-class
getEpsilon_beta_pi	getEpsilon_beta_pi
getEpsilon_beta_pi,ZinbModel-method	ZinbModel-class
getEpsilon_gamma_mu	getEpsilon_gamma_mu
getEpsilon_gamma_mu,ZinbModel-method	ZinbModel-class
getEpsilon_gamma_pi	getEpsilon_gamma_pi
getEpsilon_gamma_pi,ZinbModel-method	ZinbModel-class
getEpsilon_W	getEpsilon_W
getEpsilon_W,ZinbModel-method	ZinbModel-class
getEpsilon_zeta	getEpsilon_zeta
getEpsilon_zeta,ZinbModel-method	ZinbModel-class
getGamma_mu	getGamma_mu
getGamma_mu,ZinbModel-method	ZinbModel-class
getGamma_pi	getGamma_pi
getGamma_pi,ZinbModel-method	ZinbModel-class
getLogitPi	getLogitPi
getLogitPi,ZinbModel-method	ZinbModel-class
getLogMu	getLogMu
getLogMu,ZinbModel-method	ZinbModel-class
getMu	getMu
getMu,ZinbModel-method	ZinbModel-class
getPhi	getPhi
getPhi,ZinbModel-method	ZinbModel-class
getPi	getPi
getPi,ZinbModel-method	ZinbModel-class
getTheta	getTheta
getTheta,ZinbModel-method	ZinbModel-class
getV_mu	getV_mu
getV_mu,ZinbModel-method	ZinbModel-class
getV_pi	getV_pi
getV_pi,ZinbModel-method	ZinbModel-class
getW	getW
getW,ZinbModel-method	ZinbModel-class
getX_mu	getX_mu
getX_mu,ZinbModel-method	ZinbModel-class
getX_pi	getX_pi
getX_pi,ZinbModel-method	ZinbModel-class
getZeta	getZeta
getZeta,ZinbModel-method	ZinbModel-class
glmWeightedF	glmWeightedF
imputeZeros	imputeZeros
independentFiltering	independentFiltering
loglik	loglik
loglik,ZinbModel,matrix-method	loglik
nFactors	nFactors
nFactors,ZinbModel-method	ZinbModel-class
nFeatures	nFeatures
nFeatures,ZinbModel-method	ZinbModel-class
nParams	nParams
nParams,ZinbModel-method	nParams
nSamples	nSamples
nSamples,ZinbModel-method	ZinbModel-class
orthogonalizeTraceNorm	orthogonalizeTraceNorm
penalty	penalty
penalty,ZinbModel-method	penalty
pvalueAdjustment	pvalueAdjustment
show,ZinbModel-method	ZinbModel-class
solveRidgeRegression	solveRidgeRegression
toydata	toydata
zinb.loglik	zinb.loglik
zinb.loglik.dispersion	zinb.loglik.dispersion
zinb.loglik.dispersion.gradient	zinb.loglik.dispersion.gradient
zinb.loglik.matrix	zinb.loglik.matrix
zinb.loglik.regression	zinb.loglik.regression
zinb.loglik.regression.gradient	zinb.loglik.regression.gradient
zinb.regression.parseModel	zinb.regression.parseModel
zinbAIC	zinbAIC
zinbAIC,ZinbModel,matrix-method	zinbAIC
zinbBIC	zinbAIC
zinbBIC,ZinbModel,matrix-method	zinbAIC
zinbFit	zinbFit
zinbFit,dgCMatrix-method	zinbFit
zinbFit,matrix-method	zinbFit
zinbFit,SummarizedExperiment-method	zinbFit
zinbInitialize	zinbInitialize
ZinbModel	ZinbModel-class
zinbModel	zinbModel
ZinbModel-class	ZinbModel-class
zinbOptimize	zinbOptimize
zinbOptimizeDispersion	zinbOptimizeDispersion
zinbSim	zinbSim
zinbSim,ZinbModel-method	zinbSim
zinbsurf	zinbsurf
zinbsurf,SummarizedExperiment-method	zinbsurf
zinbwave	zinbwave
zinbwave,SummarizedExperiment-method	zinbwave
