%>%                     re-export magrittr pipe operator
addSignatures           Add molecular signatures to
                        MultiAssayExperiment
applyOverColumnGroups   Apply function over groups of columns
applyOverDFList         Apply function over selected column in list of
                        data frames
design2factor           Transform design matrix to factor
estimateStat            Estimate linear models goodness of fit
                        statistic
filterSignatures        Filter signatures by coverage
fisherMethod            Combine p-values using Fisher method
getCoverage             Calculate regions coverage
getInteractionMatrix    Compute interaction matrix
getVarianceWeightedAvgCoeff
                        Calculate variance weighted average
                        coefficients matrix
isTRUEorFALSE           Check if argument is a binary flag
mae                     Calculate Mean Absolute Error
maeSummary              Helper summarizing MAE object
modelGeneExpression     Gene expression modeling pipeline
modelGeneExpression_ridge_regression_wraper
                        Ridge regression wrapper for
                        modelGeneExpression
modelGeneExpression_significance_testing_wraper
                        Statistical testing of ridge regression
                        estimates wrapper for modelGeneExpression
mse                     Calculate Mean Squared Error
prepareCountsForRegression
                        Process count matrix for expression modeling
regressionData          Create MultiAssayExperiment object for
                        expression modeling
remap_mini              xcore example molecular signatures
repVarianceWeightedAvgZscore
                        Calculate replicate variance weighted averaged
                        Z-scores
ridgePvals              Significance testing in linear ridge regression
rinderpest_mini         xcore example expression data
rsq                     Calculate $R^2$
simplifyInteractionMatrix
                        Simplify Interaction Matrix
stoufferZMethod         Combine Z-scores using Stouffer's method
subsetWithMissing       Subset keeping missing
translateCounts         Translate counts matrix rownames
