Package: scanMiRApp
Type: Package
Title: scanMiR shiny application
Version: 1.16.0
Date: 2024-04-24
Authors@R: c(
    person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", 
      role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")),
    person("Michael", "Soutschek", email="michael.soutschek@hest.ethz.ch", role="aut"),
    person("Fridolin", "Gross", email="fridolin.gross@hest.ethz.ch", role="ctb"))
Imports: AnnotationDbi, AnnotationFilter, AnnotationHub, BiocParallel,
        Biostrings, data.table, digest, DT, ensembldb, fst,
        GenomeInfoDb, GenomicFeatures, GenomicRanges, ggplot2,
        htmlwidgets, IRanges, Matrix, methods, plotly, rintrojs,
        rtracklayer, S4Vectors, scanMiRData, shiny, shinycssloaders,
        shinydashboard, shinyjqui, stats, utils, txdbmaker, waiter
Suggests: knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0), shinytest,
        BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
        BSgenome.Mmusculus.UCSC.mm39, BSgenome.Rnorvegicus.UCSC.rn6
Description: A shiny interface to the scanMiR package. The application
        enables the scanning of transcripts and custom sequences for
        miRNA binding sites, the visualization of KdModels and binding
        results, as well as browsing predicted repression data. In
        addition contains the IndexedFst class for fast indexed reading
        of large GenomicRanges or data.frames, and some utilities for
        facilitating scans and identifying enriched miRNA-target pairs.
Depends: R (>= 4.0), scanMiR
License: GPL-3
VignetteBuilder: knitr
RoxygenNote: 7.2.3
biocViews: miRNA, SequenceMatching, GUI, ShinyApps
Config/testthat/edition: 3
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:11:11 UTC
RemoteUrl: https://github.com/bioc/scanMiRApp
RemoteRef: RELEASE_3_22
RemoteSha: bd87b89810f8bb8d4bec5a5c05e023f184467bd1
NeedsCompilation: no
Packaged: 2025-11-11 17:20:18 UTC; root
Author: Pierre-Luc Germain [cre, aut] (ORCID:
    <https://orcid.org/0000-0003-3418-4218>),
  Michael Soutschek [aut],
  Fridolin Gross [ctb]
Maintainer: Pierre-Luc Germain <pierre-luc.germain@hest.ethz.ch>
Built: R 4.5.2; ; 2025-11-11 17:32:40 UTC; windows
